RNA id: TU97861


Basic Information

Item Value
RNA id TU97861
length 465
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G73231
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18127423 ~ 18127887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acatttcatctGGCTGCCatgctgtgtttttttggttCTTGTAGAAATAGGCCATCACTTCTGCTTCTGAGTCAAGCTGAGGATCAGACAATTCAAAACCACCCACGTCCTCTTCATCAGAATTCTGGAGGAGAAAGTCCCGGAGGGCTTGTGGATGCTGCCACTCAGTGTCTGCCTCAGCTGAAAGATCACATTATATACAGATGAGTTATCTAAAGTATGATCAAAATGTTTACTCTAgtttaagggccctatcttgcacccagcgcaattgactttgtacaccgacgcatgtatcgttcctattttgcacccgacgcacagcggacttttccctccacagacgcacgttggtaaattagggaatgaacttgcgctcccgggggcggttcatcaaaaagaggaggcgtgttcaggcgcaaacgttccctggtgctattttccagtttcagaaaacaattccgc

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97857 lncRNA upstream 105 18124994 ~ 18127318 (+) True G73230
TU97860 lncRNA upstream 105 18125080 ~ 18127318 (+) False G73230
TU97858 lncRNA upstream 469 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA upstream 469 18125080 ~ 18126954 (+) False G73230
TU97833 lncRNA upstream 11100 18114715 ~ 18116323 (+) True G73216
TU97862 lncRNA downstream 1132 18129019 ~ 18129219 (+) True G73232
TU97863 lncRNA downstream 2165 18130052 ~ 18130318 (+) True G73233
TU97894 lncRNA downstream 74870 18202757 ~ 18211423 (+) True G73254
TU97952 lncRNA downstream 202780 18330667 ~ 18330913 (+) True G73307
TU97956 lncRNA downstream 263452 18391339 ~ 18395195 (+) True G73311
XM_039806002.1 mRNA upstream 21674 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 21674 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 372368 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 380397 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 386043 17739832 ~ 17741380 (+) True LOC120561605
XM_039806700.1 mRNA downstream 42942 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 182185 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 186782 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 259458 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 267520 18395407 ~ 18397717 (+) True si:dkey-79d12.5
TU97779 other upstream 348293 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 480237 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 667096 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 674855 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 758648 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 271169 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 271169 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 287211 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 504515 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 504519 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile