RNA id: XR_005639844.1


Basic Information

Item Value
RNA id XR_005639844.1
length 3505
RNA type transcript
GC content 0.39
exon number 7
gene id LOC120562796
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18632402 ~ 18637307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCTGTCTGGAAGTGGGCGGTTTTTGTTATTGAGGGAAAACATTCCTGAAAGTGAgtcagagagtgagagaaaataaaacagtcTCTGTTCCCAGTGTCACTGAGTAGAACTACTTGCTGTGCAGTTGCATCTTGTCAGCGTGGACACTGCAGTTGTTGTTTACTGTAAGCTGTCTCAACATAGTAGGCCAAAACAGAGCCTGTCTGAGCTACTTGGAATTTCACAATTTGGCATATTACACCACAAAAACCTCAGAGAAAGATGGACACAAAGAGAATGATATTCTGTTTGCTTGTGGCAGTTATTATCAGCCCTGTGTTTACTGAAGAATGGAGGGCCAATGTTGTAAAAGAACTTGACGCCCTGGTCACATCCTGTGTTGTGGTACCCTGTTCATTCACCCATCCTAAAGAGAACCTGCCCACCTCCAGACTCAGAGGGATCTGGCATCGTTCGACTGATAGAAACCAACGCATCTACTACGAGGATAGCACGCAGGTCTTGGAAAACTTTAGGGGCCGCACAAAGTTGTTGGGACATCTGGGTCAGAACAACTGCTCTTTAGAAATTACTAACATTAAAGATCATGACAACGGCCCTTTCTGTTTCCGGCTCGAACTAGCACGAACAGAGACTGATACATCCACCGTTGACAAGTTCTCCTTTGTGGAGAGTTGTGTCGAATTGAGAATGCTCCCTGATCCTCCGAATCCTACACTGAGTCACCCAAAGACGGCCATTCAAGATCGTCCCTACACTATCACCTGTTCAGTCCGCCATACCTGCCCCTCCCATGTGCCTAAACTCACATGGAGTAGAGGCACAGCAGATGAGGTAACAGAGGTCCACAAGGAAACTGGCTTTGGCTACTGGGAGGCCGAGTCCATCCTGACCATCATTCCTGAGGAGAAGGATGATCACAGTGATGTCACCTGTACAGCACAATTTAATGGACAGAAGACATCATCTACAACATTGAAACTGTATGTAAAACGTACAGAAAACTATAACCACATCATCATTCCCACGGTGGCAGTGATTGGTACAGCTGTGATCTTTGCAGTCTTCTGCATTTTCATGGTGAAAAGATACAAACTGTCTCGCAGGTGAGAaaacattttgtacattttggACCTAAAAAAAGCCTACTGGTTGTCaaggattacattttaaaagagcAATAAACAGCTGAAATTGTTGTAGGCCATTCTTATTAAAGGCAAAAAAGgattttttaatgcatttttatcTTATAATTTGGTGACTAGTTCTGTACCGTTCCAACTGTAAACTTTTACACACCAATGCATCATTTGTCTTGCATATCTCTGCAGATgtaacatgtttatttttgaTTCTGCTTTACGATAAACTATGCTTCTATCTTTATGTGAAATGGCAATGCCTTATTTtctgttcttcttttttaatcGGGTGAATCTAAAGGTGAGAATTGAAAAAAGGAACTTCACTTAAATATGTGAAACCACCCAGTTTGCTTTATTTGTTGTGATGTCCTTACAGTTAAACcgttaaaaaacaaatattaaatgtaataatatttaACATGTAAAGCTGCATCGCTGTCCCATCGCAGTCTTTTGCACACAATTCAGAACTGATATTACAGATATGTTTTCTTATTATTCATTTGTCTATTTTGCCCACATTGTGAtggaatcttaaaaaaattgtCAACAAACATGGCATGTCTTTGGTCGAAGCAAACAATGAGTTCTGTTTTTCTGTTACCGAGGGAGGGCTTGTCTGTGGCTCTTTGTCTGGTTTACTTGAAGATAATCAAAAGAAAGCAGAAGAAGTGACCAGTGTCCTCCATTACGGTCTATTGCTGACTGCCACTGTCATGCCACTTTTTTGATGCTACAACTGTGGAGACAGCAAAGTTGGAAAGTTTTAAATcctacatgtgtttttttttttttactgaaattaaaggggctgtactcgatATTCAGAAGAAAAAGTGGTCTGGGATTGCTGCCacatggctctcacagaccatTCCCCTTTTCAAATACCAACACTGTCACATCCCTCGGCTACAGATACCGACTCACAAGGCACTCACATCACATGCACGCGTGGCCGGTTGGCtttcaaaacaacaaacagagaaactcagattATAACTCACACAGAAGGAGTGTGACTTCCTTCACTGCTCAGGACaacattactccactatatctttacatagcaaatagttGTTTACTGCTTTATCATTTTCTGAATATCGAGTACTGCCCCTTTAAGTCAAAAGGCAAATTATTTGCTGAAGGGTTTAATTAGTTTGTTTGACAAGCTCGTTTTCATCTTATTCACATATTAGCTTCAGAGAAACTGCATTATGTTAATGGCAACAATAATCTGaaaaaatagacaaaataaGATATAAAATTCTGTCGACAAAGCTTGAAGGTTTTAGCAGCATAGTTCCCTGAAAAGCAATGTTTTGTACTGtaaacatgtttgtttgtgaggaggaaataaactgtaaaaaatgtattcactgTCAACTGGCATGTGAGTGTATTAAATGCACTGTGCTAGTGTCTCTCAAATGATAATTACAGCCGGTGATGACACTGTGCTGAGATGTGACAAAACAGTTTCTccccaaaataaaagaaatacattaattaaattaaacaccCACCATTTCCATCTGTCTGAACAGATAAGAGTAAAAGAAAGTGATTTgtacattacatttttgatttgtgctcactctgttgtgattgctTCATCATTGCTTTATTGATAATTCCTTTGTCCTCCACAGGGGCGAAACTCTACAAACCTTCCTCATTCTGTATACTTTGACTCATATATTTACTCAATTTtcatgaaaatatatattttgcacTTACTTTTATATTCAGCTACCTTTAGATGGAGTAAAATCTAGAACTACACCAAATTTGTCAGCCagactttttttggacaataGGTTGTTAATGTATAAGTTTCTACTTGGGGAATGAATGCTCTGTGACATGTTCATACAACTCGAGAGGCTTCTCATTTATTTGTCTACTGACGTGTATGACAGTATGGGCCGTAGCATACAACATTACATCCTAGGACATTTTCCCGACTGCCTTAAGAAATGTGTATCACGCCCTGTTGTGGCAGCCTTATCACTATGCAAATAACCTTACGCCGTTAACTAGATCCAGCATGTGAACAGTTACATGACAGTTAAAGACATATGTTGTGAATCTGTTACATTCCATTTTGTTATAACTGAATAAAGCCTCTCTCATCCGTTTAAACTGGCATCAAAATTTGGCAATATGAATTGTTACTTTTTTACTTCCTGAAGATTTACCAGCATGAACCAACCTTTAACCAATCCTCCTTTCATTTGGGTGCCCCTTTCTTATCTATCTACTCATCATCGAAGTGAATGGAGCATAGAAAATGTAGCCTGTATATTcttgtgtgtctcattaaacctttagaacattgttgaactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97987 lncRNA upstream 67320 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 137058 18490124 ~ 18495344 (+) True LOC120562823
TU97978 lncRNA upstream 162324 18467701 ~ 18470078 (+) True LOC120562806
TU97980 lncRNA upstream 171077 18455574 ~ 18461325 (+) True LOC120562807
TU97979 lncRNA upstream 183973 18440987 ~ 18448429 (+) True G73330
TU98032 lncRNA downstream 49735 18687042 ~ 18692970 (+) True G73361
XR_005639852.1 lncRNA downstream 107362 18744669 ~ 18745404 (+) False LOC120562824
TU98059 lncRNA downstream 113038 18750345 ~ 18750799 (+) True G73377
TU98218 lncRNA downstream 176002 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 189275 18826582 ~ 18828688 (+) False proser3
XM_039806713.1 mRNA upstream 84205 18545673 ~ 18548197 (+) True LOC120562811
XM_039806712.1 mRNA upstream 153380 18474502 ~ 18479022 (+) True LOC120562809
XM_039806707.1 mRNA upstream 162858 18466428 ~ 18469544 (+) False LOC120562806
XM_039806708.1 mRNA upstream 171076 18457830 ~ 18461326 (+) False LOC120562807
XM_039806709.1 mRNA upstream 171076 18457830 ~ 18461326 (+) False LOC120562807
XM_039805488.1 mRNA downstream 902 18638209 ~ 18641329 (+) True LOC120562049
XM_039806723.1 mRNA downstream 15079 18652386 ~ 18655731 (+) True LOC120562819
XM_039805283.1 mRNA downstream 62995 18700302 ~ 18712968 (+) True LOC120561938
XM_039806699.1 mRNA downstream 87745 18725052 ~ 18743800 (+) True LOC120562799
XM_039805482.1 mRNA downstream 94095 18731402 ~ 18736585 (+) True LOC120562045
TU97972 other upstream 212075 18415098 ~ 18420327 (+) False kcnn4
XR_005639678.1 other upstream 214170 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other upstream 215414 18399056 ~ 18416988 (+) False kcnn4
TU97779 other upstream 853272 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 985216 17645513 ~ 17647186 (+) True G73123
TU98024 other downstream 15104 18652411 ~ 18653637 (+) False LOC120562819
TU98057 other downstream 107355 18744662 ~ 18746675 (+) True LOC120562824
TU98340 other downstream 511306 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 511306 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 1009668 19646975 ~ 19649511 (+) True G73779

Expression Profile