RNA id: XR_005639852.1


Basic Information

Item Value
RNA id XR_005639852.1
length 630
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120562824
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18744662 ~ 18746675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGCTATCAGTGGCATAATGAAACTGGTGCTCAGCTGCATCAAGGAAACATCTACATGCTGCCAAATGTCTCCAGACACACAGGAGCTCTGTACTGTACTGCCATCAATGCAGTAGGACGAGGCATTTCAACCCCTGTGCAGCTTAATGTGTTATATGCCCCTGAGATTAAGACGGCTTCTGCCTGCTCCTCTGAGGCAGATATggtaaagtgtgtgtgcattgcGGAGTCCAAGCCTCCCAGCATGGTCTATTTTGTGCTTTCTGACAGAGTCCTGCCAAGCACCGAGGTAGAGAAACATGGCTTTGTTACCACTGGGACTCTGCGGGCAAAGTTTGGATCTTCTCAACACCCTGGGCAATGCCAACCTCACACTCCCTTTACCtaacgttttttattttttattttcagaagCACATGACATTCACCTGAACACTGAAGGAATGAACTTTGTATTGAGAAAGAGTAAAATTACACTACATGGTTTCTGTTTGGACAGGTAAGATGCAGAATCTTTATATTATCATCACTTCTGGAGCAGGAGGGATTTTGGTGATGCTTTTAATAACAGTGACAGTTGTTAAAAAACAGTAAGTTATGTTTTTCAAATAAAGCATTGAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98032 lncRNA upstream 51699 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 179587 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 249325 18490124 ~ 18495344 (+) True LOC120562823
TU97978 lncRNA upstream 274591 18467701 ~ 18470078 (+) True LOC120562806
TU97980 lncRNA upstream 283344 18455574 ~ 18461325 (+) True LOC120562807
TU98059 lncRNA downstream 4941 18750345 ~ 18750799 (+) True G73377
TU98218 lncRNA downstream 67905 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 81178 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA downstream 81178 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA downstream 81178 18826582 ~ 18828688 (+) False proser3
XM_039806699.1 mRNA upstream 869 18725052 ~ 18743800 (+) True LOC120562799
XM_039806698.1 mRNA upstream 869 18737117 ~ 18743800 (+) False LOC120562799
XM_039805482.1 mRNA upstream 8084 18731402 ~ 18736585 (+) True LOC120562045
XM_039805283.1 mRNA upstream 31701 18700302 ~ 18712968 (+) True LOC120561938
XM_039806723.1 mRNA upstream 88938 18652386 ~ 18655731 (+) True LOC120562819
XM_039805456.1 mRNA downstream 3681 18749085 ~ 18773822 (+) True LOC120562035
XM_039805454.1 mRNA downstream 19356 18764760 ~ 18773822 (+) False LOC120562035
XM_039805457.1 mRNA downstream 19356 18764760 ~ 18773822 (+) False LOC120562035
XM_039805455.1 mRNA downstream 22932 18768336 ~ 18773822 (+) False LOC120562035
XM_039805458.1 mRNA downstream 45221 18790625 ~ 18799451 (+) True si:dkey-238d18.4
TU98024 other upstream 91032 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 107362 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other upstream 107362 18632406 ~ 18637307 (+) False LOC120562796
TU98016 other upstream 107362 18635436 ~ 18637307 (+) False LOC120562796
TU97972 other upstream 324342 18415098 ~ 18420327 (+) False kcnn4
TU98340 other downstream 403209 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 403209 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 901571 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2262629 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2657723 21403127 ~ 21404603 (+) False crot

Expression Profile