RNA id: TU98059


Basic Information

Item Value
RNA id TU98059
length 298
lncRNA type intronic
GC content 0.39
exon number 2
gene id G73377
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18750345 ~ 18750799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCCTACCAGacactttattatttttaactgtcaatgccaatgaaaaataaataatttgaccTGACGATCATCAGACTCATTCATATCAGAACTGAAACACTGGAACAACAAACCCTGACCCAAAGTCTGTTTCCCCATAGATGGATatacgtttctttttttaaagaaaacagccaggttcagCACAAAGGAGTGAGGAGAATAGAGAGGGTGAAGGGCAGAGAGAGCAAGATGAAGAAGGTGAGAAAATGGCTAGGTAGCCTATAAgacatatagtatatagtaggactactgtg

Function

GO: NA

KEGG:

id description
ko00120 Primary bile acid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639852.1 lncRNA upstream 4941 18744669 ~ 18745404 (+) False LOC120562824
TU98032 lncRNA upstream 57375 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 185263 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 255001 18490124 ~ 18495344 (+) True LOC120562823
TU97978 lncRNA upstream 280267 18467701 ~ 18470078 (+) True LOC120562806
TU98218 lncRNA downstream 62510 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 75783 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA downstream 75783 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA downstream 75783 18826582 ~ 18828688 (+) False proser3
TU98215 lncRNA downstream 109529 18860328 ~ 18861838 (+) False kmt2bb
XM_039806699.1 mRNA upstream 6545 18725052 ~ 18743800 (+) True LOC120562799
XM_039806698.1 mRNA upstream 6545 18737117 ~ 18743800 (+) False LOC120562799
XM_039805482.1 mRNA upstream 13760 18731402 ~ 18736585 (+) True LOC120562045
XM_039805283.1 mRNA upstream 37377 18700302 ~ 18712968 (+) True LOC120561938
XM_039806723.1 mRNA upstream 94614 18652386 ~ 18655731 (+) True LOC120562819
XM_039805454.1 mRNA downstream 13961 18764760 ~ 18773822 (+) False LOC120562035
XM_039805457.1 mRNA downstream 13961 18764760 ~ 18773822 (+) False LOC120562035
XM_039805455.1 mRNA downstream 17537 18768336 ~ 18773822 (+) False LOC120562035
XM_039805458.1 mRNA downstream 39826 18790625 ~ 18799451 (+) True si:dkey-238d18.4
XM_039805438.1 mRNA downstream 49556 18800355 ~ 18805299 (+) True hsc70
TU98057 other upstream 3670 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 96708 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 113038 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other upstream 113038 18632406 ~ 18637307 (+) False LOC120562796
TU98016 other upstream 113038 18635436 ~ 18637307 (+) False LOC120562796
TU98340 other downstream 397814 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 397814 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 896176 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2257234 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2652328 21403127 ~ 21404603 (+) False crot

Expression Profile