RNA id: TU98221


Basic Information

Item Value
RNA id TU98221
length 1932
lncRNA type sense_over
GC content 0.40
exon number 3
gene id proser3
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18819201 ~ 18828688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatttttgaagaaaTATTGCCACATTAAAAAGTTTGGAGATATGTTTGTGTGCATCATTAATCACAATTACAATAAAGTGCATTTTACAAAAGttgcacaaacaaaaacagcaatttGAGCTTTCAAATGCAgaatatttacaaagactggTTCCTTGAAACATCATGTAAGATTGATGAGTAATCGCAGAGCAGTATATACAAACCTCAGAGAGCAGGGAATATTAGAACAGTGCCAGGAAAAGAACAAATGGGTGTTTTGGCACACGTTGAGTGTTGCTGTGGATAAATGAGCCTGAAGTTATTTCTGCATGTGCCTGTGAGTTTCTAAAGGCTTTCATTACACTTGTTTTCTCATACACAGTGAAGATGGTTGAGATTTGAGTGCTTGGTATTAATGTTATTTGGTCAGGATTCTGGAGTCCTCGGTTTGCAGCATCGGTGCAGATATGATAAGGATGCCATCTGGAGAGACCGCTGACTCCAAAGCCATGGTGTCCACTCCCTTTGGAATTCGGTAGCGGCGGTTAAACTGCCGTGTTGTAACCCCTGGACCATCCTTCTtttttttcttcatgcTTTCCTTGCACTTCCACAAAGTCTCCTATTACTTTGACCATTAGGTCTTCTGGGTTGAAGTGCTTTACATCAACTTGAACTGTAAAACCACTGTTGTCACAGTTAACCTACCAACAGGAGTGGAAAtactgtgtattattattatatagaaataaaatCTTTCTAATCACCACCATGTACTAAATAGATATCCTTAATGATATTTGAGTGTAAAAGTTCATTCTTCACCTTGGAAACAGTAGTCTGACAGAACATTTCTACTTGTTTTTTAGCTTTCAGCTGCAAATCGGGGTTTTCAGCTGTTGAAAATGACTGTCAGgtgtcaattttatttgtatagcacctttcattacacctaaacccaaagtgctttacattaaaaacGGCATACACACTAAAACAAATACGCAAGACAATCAACAAAAACCAACAATACATACAAGTGCGACCATATAAATTcatacatactcacacacacacacacacacacacacacacacacacacacacacacacacaccctgtaattaaacaaatgtctgagaaaataAAGGTTTTGAGTTTGCTTTTGAATGCAGACACAGTTGTGATGGACCACAGGTCATCAGGcagatgcatttaaaaaaagctagGCCCTGGAGTCAATATACATGtgttaatatactgtacatatatttcCATTTCAAGTTACTATTGTAAAAGGTTATTTGGTATCACTGTGTTTTAATTGTGTTTCCATGCAGTTCTATTGAGCCAGTATATTAACTTCTTAACATAAGTGACTATGACCTACCTCTGCGGAGCTGGTATTATCAGTCTCTGGCATCAGTAATTTCGGAGACCAATTATATTGTCCATAAGTCCCATTGAGCCGAGGAATAAGAGGTGGTAAAACCTTCTCCCATGGGATACCACCATCTGGCAGATTGGGTGGCAGGATGAAGTCCATTTCTAATCTCTTCTTATATTCCCTGTCTAAATGAGTGTGCGGGAAAGGACAGCCCCTGTTTAACTGCTTGTGGTGAGTCCTAAAGCAGTACTGTGAGTACCGATGATGCACTGGTGCAGTAGTGCGCCGGGCTGTCTGACTCCAAGCTCCTTGCCCTCTGGATTCTTGACGTGACTgactgtgtgtccgtgtgtgttttATACTGGAGTTGCGTAATTAGTTGGGAATTCATAGTGGGGCACCTTGCCTCTGTTATGTTCTGGATGCGTACCCTTGGGTGTTCAGGCAGGACCATTTTGGATAAGAGTGTATTGTTTTGGGAGTGACGCAGCTGTTGTGAGCTTATTGGCAATGGATGTGTTTATTAGCTATTAGCCTACCAATGTTGTAGCCTGCAGTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98218 lncRNA upstream 10985 18813309 ~ 18815597 (+) True G73484
TU98059 lncRNA upstream 75783 18750345 ~ 18750799 (+) True G73377
XR_005639852.1 lncRNA upstream 81178 18744669 ~ 18745404 (+) False LOC120562824
TU98032 lncRNA upstream 133612 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 261500 18501151 ~ 18565082 (+) True G73338
TU98215 lncRNA downstream 31640 18860328 ~ 18861838 (+) False kmt2bb
TU98232 lncRNA downstream 43686 18872374 ~ 18873957 (+) True G73493
TU98239 lncRNA downstream 79815 18908503 ~ 18911216 (+) True G73499
TU98243 lncRNA downstream 82706 18911394 ~ 18932173 (+) True G73501
TU98334 lncRNA downstream 296468 19125156 ~ 19125848 (+) True G73568
XM_039805462.1 mRNA upstream 14210 18809356 ~ 18812372 (+) False LOC120562037
XM_039805421.1 mRNA downstream 4557 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA downstream 4557 18833245 ~ 18861958 (+) False kmt2bb
XM_039805431.1 mRNA downstream 105542 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805284.1 mRNA downstream 192466 19021154 ~ 19089959 (+) True nphs1
XM_039806433.1 mRNA downstream 266780 19095468 ~ 19101074 (+) True fxyd5
TU98057 other upstream 79907 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 172945 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 189275 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 319925 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 319925 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 818287 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2179345 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2574439 21403127 ~ 21404603 (+) False crot

Expression Profile