RNA id: TU98232


Basic Information

Item Value
RNA id TU98232
length 387
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G73493
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18872374 ~ 18873957 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAGTGTTCCAGTAGCCTCTGTCTCCCTGcttgtcttttgctttccctctcctcctcatgtcTTCCTTCTGGTGATGCTAGGGCAGCCTCAGTTTGTTCCTTAGTcccatttaaatgatacttGTGCCATCAGCGATGCCCCGCTTaggtccgccattgttgtttttttaacgagCCGGCAAAGCCGCGCGCATAGGATTGTGGGTGATTTGGGAGCGCGAAAGACAGACAGTCCGTCTGTCCAATCAGGAGGGTCCGTCCTCTCCTAGATAGGCCCTACCTTTTCCGGTAGAAGTTAATgtcgttgtgctttatgatttgttgaagtgctTTCCTATTtgtcgttttgttttcctatttgccgttgtgctttatgatttgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98215 lncRNA upstream 10536 18860328 ~ 18861838 (+) False kmt2bb
TU98220 lncRNA upstream 43686 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA upstream 43686 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA upstream 43686 18826582 ~ 18828688 (+) False proser3
TU98218 lncRNA upstream 56777 18813309 ~ 18815597 (+) True G73484
TU98239 lncRNA downstream 34546 18908503 ~ 18911216 (+) True G73499
TU98243 lncRNA downstream 37437 18911394 ~ 18932173 (+) True G73501
TU98334 lncRNA downstream 251199 19125156 ~ 19125848 (+) True G73568
XR_005639800.1 lncRNA downstream 274564 19148521 ~ 19158369 (+) False LOC120562630
XR_005639799.1 lncRNA downstream 274566 19148523 ~ 19158369 (+) True LOC120562630
XM_039805421.1 mRNA upstream 10416 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA upstream 10416 18833245 ~ 18861958 (+) False kmt2bb
XM_039805436.1 mRNA upstream 45750 18819201 ~ 18826624 (+) True proser3
XM_039805437.1 mRNA upstream 45750 18819201 ~ 18826624 (+) False proser3
XM_039805459.1 mRNA upstream 60002 18809497 ~ 18812372 (+) True LOC120562037
XM_039805431.1 mRNA downstream 60273 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805284.1 mRNA downstream 147197 19021154 ~ 19089959 (+) True nphs1
XM_039806433.1 mRNA downstream 221511 19095468 ~ 19101074 (+) True fxyd5
XM_039805285.1 mRNA downstream 242636 19116593 ~ 19120701 (+) True LOC120561940
XM_039806430.1 mRNA downstream 255567 19129524 ~ 19147793 (+) False LOC120562624
TU98057 other upstream 125699 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 218737 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 235067 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 274656 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 274656 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 773018 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2134076 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2529170 21403127 ~ 21404603 (+) False crot

Expression Profile