RNA id: TU98239



Basic Information


Item Value
RNA id TU98239
length 1061
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G73499
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18908503 ~ 18911216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCCTTAGCAATGTTGTGCCAGTACACGTAACTCTCACAAGCATCCATCTGCTCCTGGTGGAGGAAACGGCATCGGTCGGGCACCAGCAGGGCCTCGCTCACATACTCGCCCTCTAGACAGCGGTAGGGCAGGACTATGAAGGGGTGTGTCTGGCAGTGGCCCCAACCTTTCTTACACCAGGCGGGGATGGTGACAGGTCTTTTTGACTCCTCTATATGGGAGATCGGAAGTGCTGGGTACATCTGGACATACAGGTACATGCAGAGATGAcaagagacacagaaacagatagatggatggacagaACAGAGGGTTTTAAGACAAGAGGAGCAGTGGACAGGGGAAAAAATGGTTAGAGAAGAGGTTCAGGAATTGGTTGAGAGGGGGAGAATAAAAGTAGCATGATccggggagaggaggaaggagagcaCAGTCAGTGGGGAGAACGCTAACAAGGGAGAGTCATGCAACATATTCTCTAAATACTTATACAAAGCTGTGTAAGGCCTTCATCTGAAGCCACATTGGACATGGCATTCTGAAGTTATTtataacatttttgttttttaatatttcCAATTTCACATCTGACTACTTACACTTAAAATTGAGGCCCATAATTTGAAACTTGTGAGGTTTAGTGGTGAGAGAAATGTAGCTGGCACAGAGTCTGAATGCACACTAAAAATGCTTTCATCACAAATGTCAAGGAAAACAGGGAGGCTTTTGTGTAAAAGCCATCACAGATGCATAATGTGTCTGCTAATCACATTACAGTCCATTCAGGCTCGTGGCTGCTGCTCTCTGTAGCAGCTATGTCTACTCTGACCTCCAGATGGCGCTTGGTTGCCTTACTGTTGCACTTCAAATAAATGTGGAGTGTATGGAGAGTATGTGTACCATTGATTACTTTACAGTAGGTAGATGTTAAAGAGTACACATATCAGGTAACAAGAGGAGGAAAAGTGGATGGTGCTACAAatgaaatattgaaatattCCAACAGGCCACCATCACTTTACTATATATGGTTAAATATATAGATTTATAGGAcaggtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98232 lncRNA upstream 34546 18872374 ~ 18873957 (+) True G73493
TU98215 lncRNA upstream 46665 18860328 ~ 18861838 (+) False kmt2bb
TU98220 lncRNA upstream 79815 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA upstream 79815 18826582 ~ 18828688 (+) False proser3
TU98224 lncRNA upstream 79815 18826582 ~ 18828688 (+) False proser3
TU98243 lncRNA downstream 178 18911394 ~ 18932173 (+) True G73501
TU98334 lncRNA downstream 213940 19125156 ~ 19125848 (+) True G73568
XR_005639800.1 lncRNA downstream 237305 19148521 ~ 19158369 (+) False LOC120562630
XR_005639799.1 lncRNA downstream 237307 19148523 ~ 19158369 (+) True LOC120562630
TU98341 lncRNA downstream 237397 19148613 ~ 19158995 (+) False G73570
XM_039805421.1 mRNA upstream 46545 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA upstream 46545 18833245 ~ 18861958 (+) False kmt2bb
XM_039805436.1 mRNA upstream 81879 18819201 ~ 18826624 (+) True proser3
XM_039805437.1 mRNA upstream 81879 18819201 ~ 18826624 (+) False proser3
XM_039805463.1 mRNA upstream 96131 18809933 ~ 18812372 (+) False LOC120562037
XM_039805431.1 mRNA downstream 23014 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805284.1 mRNA downstream 109938 19021154 ~ 19089959 (+) True nphs1
XM_039806433.1 mRNA downstream 184252 19095468 ~ 19101074 (+) True fxyd5
XM_039805285.1 mRNA downstream 205377 19116593 ~ 19120701 (+) True LOC120561940
XM_039806430.1 mRNA downstream 218308 19129524 ~ 19147793 (+) False LOC120562624
TU98057 other upstream 161828 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 254866 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 271196 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 237397 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 237397 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 735759 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2096817 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2491911 21403127 ~ 21404603 (+) False crot

Expression Profile