RNA id: XR_005639801.1


Basic Information

Item Value
RNA id XR_005639801.1
length 962
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id LOC120562631
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19159464 ~ 19162804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAACAATGTTTACAGACCGAAGTGACTTTGATTATGATTATGAGACATTGCGGACCACAGGGGTTGTCCTTGCTGTAGTCATGTTTGTCTCTGGCATTTTAATAGCCCTCATTCCAGCTCATCTGGAAGCCAAATTCCACCAAAGACAGAGGtgCCTCCTCAAACAGTATAGAAAATAATGTATCAAAAGCGAGGAAGTCGATACGGGAACCACGGCAGCAAATACATACCCAGACACACCGGTTGTTTATAGCAATCCCTGTTATGGCTAATATACTTCTGCCAGCTGGATGAGCAATAAACAGGGTTTTCCAATGCATCTTTATCTGGTTTCTTTTAGGCTCCCAATGTTTTCTGTAGAATGTCTCAAAATAAGGGGGTGAAATATCTGTCTACACATTGCTCAGAATTGTGTGAGtgttgaaattaaaataaaaaaactaagaaAAACAAATGCTCCCAACCATGAGACTTGATTTGGTACttttaatcaaacaaatgcaacaagTGTTGTATCTCTTCCTTACATGTTACTCCTGTAAAACAATTAAATTAAGAGCAtgattaaatatttatatacaaAATCTGCAGCTCGAAACAAAGAATAGCATGTGTTGATCGATCGTAACAATTGtcttttgccttttatttttctttatttctgttgATATCTACTTGTTTAGCATGGCAGAATAATGAAAAACCCCAAAATAGAATAGGCCAAATATAACATGCTAAAAGGAAATAGCTGGTATCTTGATGAAAATATTCAGTAGCctaatgtattttgttttatttacaagctttgaaaatattcaaatgaatgaaatgtgtatttgttttcctattcgtcatttattttctgtttaaacCTATTGCAAAGGTATTACAAATGATGTTATTACCTGTAAAGCTGAACAATGAGGCAACTGTTTCAAATAAAGGTCTCCTCGACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639798.1 lncRNA upstream 1803 19158475 ~ 19159018 (+) True LOC120562629
TU98341 lncRNA upstream 1826 19148613 ~ 19158995 (+) False G73570
TU98342 lncRNA upstream 1826 19148613 ~ 19158995 (+) False G73570
XR_005639800.1 lncRNA upstream 2452 19148521 ~ 19158369 (+) False LOC120562630
TU98350 lncRNA downstream 27216 19190020 ~ 19191619 (+) False hcst
TU98390 lncRNA downstream 109923 19272727 ~ 19276516 (+) True G73586
TU98410 lncRNA downstream 156634 19319438 ~ 19320048 (+) True G73606
TU98557 lncRNA downstream 288979 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 290965 19453769 ~ 19456616 (+) True LOC120562732
XM_039806430.1 mRNA upstream 13028 19129524 ~ 19147793 (+) False LOC120562624
XM_039806431.1 mRNA upstream 13028 19129594 ~ 19147793 (+) False LOC120562624
XM_039806432.1 mRNA upstream 13028 19131491 ~ 19147793 (+) True LOC120562624
XM_039805285.1 mRNA upstream 40120 19116593 ~ 19120701 (+) True LOC120561940
XM_039806433.1 mRNA upstream 59747 19095468 ~ 19101074 (+) True fxyd5
XM_039804865.1 mRNA downstream 27275 19190079 ~ 19192102 (+) True hcst
XM_039804867.1 mRNA downstream 27296 19190100 ~ 19192102 (+) False hcst
XM_039804866.1 mRNA downstream 27297 19190101 ~ 19192102 (+) False hcst
XM_039806478.1 mRNA downstream 30671 19193475 ~ 19194806 (+) True LOC120562651
XM_039806917.1 mRNA downstream 35716 19198520 ~ 19204699 (+) True LOC120562955
TU98340 other upstream 1826 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1826 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 414146 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 507184 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 523514 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 484171 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1845229 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2240323 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2436251 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2606744 21769548 ~ 21770286 (+) True G74633

Expression Profile