RNA id: XM_039804865.1


Basic Information

Item Value
RNA id XM_039804865.1
length 971
RNA type mRNA
GC content 0.38
exon number 6
gene id hcst
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19190020 ~ 19192102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAACAGTGTCACAGCAACATTTAGATTCCAGACAGCAGGTCAGCCCGAGAAGCGCAGACTTGTGACTCATTGTGAAAAAGGAGTTCTTTATTCCGTACtgcagaatcaaaaggtcaaaCCTACTGTTTCAAACCTTTTAGaACGGTCACGACTGAGTTGACAAACTTGACAATGGCACACAACAAATTCTTTATCGTTGTCCTATTTTTTCTGTGCAACCTGGCTGTGGCGCTCACAGAGAGCAATGTGTCCTGCTACAGGGTCGAACCGGGGACAATAGCAGGCATCATCTGTGCAGATATGCTGCTGACCCTTATCATTGTCATTGTTACCTACCGATGTGCCAGTTTAAGGCGTCAGAAGATAGAAAATGCTAACAAAGTGTATATGAATGTACGGGCCAACTGCAAAAGCTAATCTAAAGATGGTGCAGTACATTATGAAATTATGTTCATTTTTTAAGATCCTGTTTTGTAAAAAAACGCCATTACAAAATtgtataacattttttttttacattaaaccTTTGTTCCAATAAACACAAGTAGAATGTCTTGCACATGTTACATTTCTGCTTAGCCTTACAAGGTGTGCTTGTGGTCTCCATCTATCCGCTTGGAGTTATTTTGCAAAACCTAATAAACAAAAGGTGTGTCAGACTGTTTAAACTAAATCATGTTCACCAACCTCGTAAATAAAATATCTCTGAATGCTTTCAAGGTTCATGTAATGTTGGCACTGTAACACCACCATACAGCACCCTCTGCAGTTGACTTTCGGTAGCACAATGCTGTATTTCAATAGGCCCTAAAGATTTTATGtggaaatattttcattatgaaAGGCTGCATTGATATGAGTGATTTCCAAAAATAGAAGACGGACCCAGTCATTTTACATGGATGTTTTACAGTGTAGCATCTGACAAACCTCTGAGTTGATTatgtattaaaataaatgttgattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639802.1 lncRNA upstream 27275 19159464 ~ 19162804 (+) True LOC120562631
XR_005639801.1 lncRNA upstream 27275 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 27291 19159781 ~ 19162788 (+) False LOC120562631
XR_005639798.1 lncRNA upstream 31061 19158475 ~ 19159018 (+) True LOC120562629
TU98341 lncRNA upstream 31084 19148613 ~ 19158995 (+) False G73570
TU98390 lncRNA downstream 80625 19272727 ~ 19276516 (+) True G73586
TU98410 lncRNA downstream 127336 19319438 ~ 19320048 (+) True G73606
TU98557 lncRNA downstream 259681 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 261667 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 422401 19614503 ~ 19625611 (+) True LOC120562701
XM_039806430.1 mRNA upstream 42286 19129524 ~ 19147793 (+) False LOC120562624
XM_039806431.1 mRNA upstream 42286 19129594 ~ 19147793 (+) False LOC120562624
XM_039806432.1 mRNA upstream 42286 19131491 ~ 19147793 (+) True LOC120562624
XM_039805285.1 mRNA upstream 69378 19116593 ~ 19120701 (+) True LOC120561940
XM_039806433.1 mRNA upstream 89005 19095468 ~ 19101074 (+) True fxyd5
XM_039806478.1 mRNA downstream 1373 19193475 ~ 19194806 (+) True LOC120562651
XM_039806917.1 mRNA downstream 6418 19198520 ~ 19204699 (+) True LOC120562955
XM_039806502.1 mRNA downstream 13496 19205598 ~ 19211398 (+) True LOC120562665
XM_039806503.1 mRNA downstream 19393 19211495 ~ 19220952 (+) True LOC120562666
XM_039806924.1 mRNA downstream 53256 19245358 ~ 19269769 (+) True LOC120562959
TU98340 other upstream 31084 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 31084 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 443404 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 536442 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 552772 18632402 ~ 18637307 (+) True LOC120562796
TU98645 other downstream 454873 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1815931 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2211025 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2406953 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2577446 21769548 ~ 21770286 (+) True G74633

Expression Profile