RNA id: XM_039804775.1


Basic Information

Item Value
RNA id XM_039804775.1
length 3213
RNA type mRNA
GC content 0.46
exon number 9
gene id si:ch211-254p10.2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19447167 ~ 19453283 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTGCAATGTTATTAAGCCTTTCAAAAAAACTACAGCTTGAATTCCAGCTCTCAGGAAAGACTAGCATCCCAATGTAGGATACATGGCACAAGATACATAATCGAGGAACAACAGTAAGGATTGAGTGGAACATCAGAACAAAGGAAATGTCTAAGCGAGCAGACGCCTCCCAGTGTGGGGGGGTTGTGGTGGAGTTTGAGTCTGACGACATCAGGGATGCAAGAGCTAAAAGGGCGAGGAGTATACCAGGTTCAGCTCTTATCTACCTCAAGGGTCCCAAGTTTCTCATCTATGTCAGTGGAGCATTGTCTATGTGGGGCGACCGCATGTGGCACTTTGCAATTTCTGTGTTCCTGATTGAGCTGTATGGCCGTAACCTGCTGTTGACTGCGGTGTTTGGGTTGGTAGTGGCTGGGTCAGTGCTCATGCTAGGGGCTTTGATTGGAGACTGGGTTGATCGCAATCCCAGGAATAAAGTTGCACATGCATctcttttcattcagaacatCTCAGTGACAGTATGTAGCATTGTGCTCATGTTGGTGTTCTCATATAAGCAAAGGATTGAACAGATCTGGGATGGATGGCTTACTGTGGTTTGTTATACGGTGGTGATCGTCCTGGCAGATGTGGCAAACCTTGCAAGCACAGCACTGACCATTGCCATTCAGAGGGACTGGATTGTGGTTATCACAGGCTACAACCGAGGTCACCTAGCTGGAATGAATGCAACCATGAGGCGGATAGATCAGGTGACTAACATCCTGGCCCCACTAGCAGTGGGACAGGTCATGACCCTGGCCTCCAATGTAGTTGGCTGTGGCTTCATCCTGGGCTGGAACCTTGTGTCTCTCATTGTGGAGTTCTTCTTCTTGTCACGGGTGTACCGCATCGTCCCTGCTCTTTCAATCAAACCACCAgtggtggaggtggatcagGTGTTTCTGCAGAGGGTTGAGAGGAGATTGTCACAAGGGGAAGGTAATGTTGCACAACCTCAACCTCTGACCGAAGGAAACTGCAACACAGGCCTGCACCTAAAAGAAATCACCAACCTGCCGCTGTGTTTCCGGAGGTTTCGCTGGCTGGTGAGCACCTGCAAGGACGGCTGGAGGGCCTACTATCGCCAGCCTGTCTTCTTGGCAGGAATGGGTCTGGCTTTCCTCTACACCACAGTGCTGGGCTTTGACTGCATCACCACTGGCTATGCATATACTCAGGGCATAAGCGGCTCCCTCCTTAGTCTGCTGATGGGTGTATCGGCTATCACAGGGCTGATGGGCACCGTGATGTTCACCAGACTCAGGAAGTCCTATGGCCTTGTTAACACAGGCATCATCTCAAGCTGCATCCACCTGGGCTgcttgctgctgtgtgtgtgctctgtgtttgCCCCTGGCAGCCCTATGGATCTTAGCTTGCTGATGCCCTACATTACCTCCAACTCCTCCTCTGAGCTTGGAGGGATGGCAAGCCAAAGGCAAAAACATACTTATCCTCTGAGGGGGGGCAGCAATCAACCACTGCTACCCGACCGCTCCTCCATCCACTGGACCAACAACACTGTACTCTTTGACAACGtcccctctgacacagcgccaGAATCTTACATCTCCATTATCCTTCTGTTCTTGGGTGTCATCACAGCACGCATTGGTCTCTGGTCCTTCGACCTGACAGTGACCCAGCTCCTGCAGGAGAACATCTGTGAGTCAGAGAGGGGTGTGGTAAATGGGGTGCAGAGCTCTATGAATTACCTGATGGATCTGCTTCACTTCATCATGGTCATTTCCGCTCCACAGCCACAGCACTTTGGCATCCTAGTTATCATTTCTGTATTATTCATCACCACTGGGCACACTATGTACTTCCTGTATGCACACAAAGCCAAGAGAAAACGCCGCCTCAACACATAAGGAGCAGACATGGCCCACACATCCAGACATGAGATGCTTATCAGCACTGACTCCACTCTGCACCTGTGAAATGAATGTCTCCCTCCTACTCCGTCAGCAATCTTATTGCAACACTCCACTCCCGACTTAGCCATTCATTTCAGCACAACACAGCAAGTGCCTGTCCCACCTTGTTTGCTTTCTTCCTGCAGGGCCACGTGCCACAGCAGCAAACAAGAACTCAGGTGAAATAGAGTGGGAGACACGCTCTCCCTTCGTGTACATAAGTTGAGGTGGCTACAATAAATGCAGCAATGGTACCTCCAGGGGAAATGTCCTAATCTAATGTACAACAGGACACAAAGGTAGCAGCTAAGGCACCAGCACATGCCTTTGCAAAACCTGTAAGATAACTGCAAGACTTTCATCAAACAAGCCTGTTAACTTACATAGCTTTTTGGATGggagggtggatggatggagcgCTTTTTCTAACCTTCACTCAGTAAAGAACTGgtgtggtgaggaaaacttaaCAGTGATATGAAAATGCAAACAAGACGAGACGGTACTTCTACAAGTGGCATCGATGTTACTGATCCGTCCACTTGGAAATATTCCAGGATGTCCAAAAAGGAACATAAAGGGAACTTGATGTGAAATTGtttcattagaaaaaaaaatatctgaaagGCAGCCCCCCTTTTAATGGACAGAAGTGAAAGGACAAAGTATTCCCTTCCCCTGGTTTGTTTCTCTGTGGATGAATCAAGCAAACATTTGCCTTTCTTTTATGCATGTAAACCTTGGTTATggataacaacaacaaaaatgatcaCATCATGCCATGGACAAACTTTAATGCAAACTATTTTATTCTAATTGCTTGTGTACTTAGATGAACAAAAATAGTGTCCAAACTTTATTTCCTTCCCATATAAAGAGTGATATTAATAGTTTTATAGAAATCCAAGATGAAAGCAATCTTCATTTTGTGACATGTTTGAAATCAGTAATACCTATGTGTTGACAGCAAATGTTGATCACTGCTATTGGCAGTGTTGTATTACACTTTGCTTTTATTCTTTTGTAGTTCTGATGAACTAAACATTACCTTACCTCAACTAAGAACAAGAACACTGTTGGGAATATGACTTGGGAATTACTCTCAGCTActgtttgttttcatatttcctTCATGTACAGTGGAAATAACATCAACGTTTAACCTTTTGTCATACAACCAGCAACACATCTCAATATATTTGTATACTTTTCCTGTGAAATTTCTGTATAATATGTTGTCCTATTTTTTC

Function

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K14685 SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA upstream 127119 19319438 ~ 19320048 (+) True G73606
TU98390 lncRNA upstream 170651 19272727 ~ 19276516 (+) True G73586
TU98350 lncRNA upstream 255548 19190020 ~ 19191619 (+) False hcst
XR_005639801.1 lncRNA upstream 284363 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 284379 19159781 ~ 19162788 (+) False LOC120562631
XR_005639814.1 lncRNA downstream 486 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 161220 19614503 ~ 19625611 (+) True LOC120562701
TU98640 lncRNA downstream 181590 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA downstream 181590 19634873 ~ 19636882 (+) False G73776
TU98646 lncRNA downstream 193692 19646975 ~ 19648907 (+) False G73779
XM_039804777.1 mRNA upstream 1050 19440837 ~ 19446117 (+) True LOC120561621
XM_039804704.1 mRNA upstream 6934 19434690 ~ 19440233 (+) True slc6a19b
XM_039805004.1 mRNA upstream 107453 19328950 ~ 19339714 (+) True rxrbb
XM_039805006.1 mRNA upstream 107453 19328950 ~ 19339714 (+) False rxrbb
XM_039805005.1 mRNA upstream 107453 19329224 ~ 19339714 (+) False rxrbb
XM_039806598.1 mRNA downstream 6272 19459555 ~ 19477316 (+) True LOC120562733
XM_039806599.1 mRNA downstream 12451 19465734 ~ 19477315 (+) False LOC120562733
XM_039806843.1 mRNA downstream 124269 19577552 ~ 19582754 (+) False sp8b
XM_039806841.1 mRNA downstream 126446 19579729 ~ 19582754 (+) False sp8b
XM_039806842.1 mRNA downstream 126614 19579897 ~ 19582754 (+) True sp8b
TU98340 other upstream 288172 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 288172 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 700492 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 793530 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 809860 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 193692 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1554750 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1949844 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2145772 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2316265 21769548 ~ 21770286 (+) True G74633

Expression Profile