RNA id: TU98646


Basic Information

Item Value
RNA id TU98646
length 314
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G73779
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19646975 ~ 19649511 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTGTACCAGAGCTTTGGGTGGTGGATGAAAGAATGATGGACTCCATTGCTGGCAGGGTCCTTTGCTGATTTGCTCAACAGAAACTCTTGGAGTTTCTGCTTCACCTCTGTACTTGCCACTGCACCTGTGAGACTCTCTCGGGAGCGCTCCTTGCCCCTGAGGATCAGGCAGGAAACATGCTGCTCTCGCCGATGCCTCTCCTGCTCCTTCTCCTGCtggttctgctgctgctgctgctgctgccgctccAGACGGCGCTCCTTTTCTTCAAGttcctgctgctgtttcatGGCCTGGAGCTCGTGCTGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98640 lncRNA upstream 7516 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA upstream 10093 19634873 ~ 19636882 (+) False G73776
XR_005639810.1 lncRNA upstream 21364 19614503 ~ 19625611 (+) True LOC120562701
XR_005639814.1 lncRNA upstream 190359 19453769 ~ 19456616 (+) True LOC120562732
TU98557 lncRNA upstream 194795 19451783 ~ 19452180 (+) False si:ch211-254p10.2
TU98714 lncRNA downstream 171328 19820235 ~ 19820591 (+) True G73836
TU98764 lncRNA downstream 370202 20019109 ~ 20052006 (+) True G73871
TU98775 lncRNA downstream 391964 20040871 ~ 20046380 (+) True G73881
TU98936 lncRNA downstream 558940 20207847 ~ 20209327 (+) False LOC120561838
TU98940 lncRNA downstream 567300 20216207 ~ 20217339 (+) False si:ch211-257p13.3
XM_039804886.1 mRNA upstream 33823 19611746 ~ 19613152 (+) True twist1b
XM_039806840.1 mRNA upstream 51620 19590103 ~ 19595355 (+) True macc1
XM_039806839.1 mRNA upstream 51620 19591212 ~ 19595355 (+) False macc1
XM_039806841.1 mRNA upstream 64221 19579729 ~ 19582754 (+) False sp8b
XM_039805072.1 mRNA downstream 26236 19675143 ~ 19693798 (+) True ankrd28b
XM_039806492.1 mRNA downstream 46008 19694915 ~ 19700987 (+) True hacl1
XM_039806493.1 mRNA downstream 52173 19701080 ~ 19710338 (+) True colq
XM_039806494.1 mRNA downstream 52173 19701080 ~ 19710338 (+) False colq
XM_039806495.1 mRNA downstream 52173 19701080 ~ 19710338 (+) False colq
TU98340 other upstream 487980 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 487980 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 900300 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 993338 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 1009668 18635436 ~ 18637307 (+) False LOC120562796
TU99269 other downstream 1359126 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1754220 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1950148 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2120641 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 2483671 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile