RNA id: TU98775


Basic Information

Item Value
RNA id TU98775
length 1333
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G73881
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20040871 ~ 20046380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGTGTGAGTGTGTCACATTAGTGTGTCctggggtgtatgtgtgtgtgaaaaactcTTACAGTAACCCTCAGAgctgtgtgtgctggtgtgtgtagCACTTACAGCAGTGTGTGGCAGTGTGTGGCTGAGCTGCCTGTTGGTGGGAGTGGAGGtgggggtggaggtggaggtggaggtggaaggCTTGCAGTGGCCCTCGCTGCCTGCCCTGGGCCGGCGCCAGGGACAGGGAGGAGGGAGCAGTGCAGGGCTGTCCACACATGAGCGCATGCTCTGCGAATGGGTCAGAAcaacacttcacacacacacacacgcacacagcatGCATGGAGCTGGGCAGGCCAGTTACACAGTTAGTGCCATGCAGTTTGACATTTCACATAACAAACAGTGCTTGAAGTGTCCTAAGAGTGAGTAACTGTACTTTTTAGTGCACCACCACTTCTTGTGATATGTTTGTAGTCTCTTGACCCTTCTTCTCTCATATCCACACACtattatattactattactacaCTGTAATCCTGCTGTTTACTGAACCATTTTGCTGCTAGCTAAATACGTCTACATCCCAACCACAGCATCCCTGACATGGACTGATTTGTAGCTGCACCTCTTGTATGCCACTTCAAGCACAGTTGAAGACAAATATACAAGGTTAGTTTAAATAGTTGGAACAGCCACACTATCACAATGATCACAAACAAAATCAGGCATGAGATTTTATAGCATAGCTTTGTCTAATATACCGTTGTGGCTCTTCCCAGTTGAAGTCATGCTCCTGTGAGTCATGCTCTTTCATTTCAATACAGTGACATAACCACAGGGGATGGTGCCATCGTGTTTTTTTCGGCCAGTCACACAATAGCAAAGCAATTTTCACAAAAATCATCAAGCAGCTTTGGACAATTAGTAATTGTTGTCAATGTCAATAAGTGTACCATGTTGTGGAAATGCAATTTGATGTGATAAGTGACttggtaaaatgtaaaaatgaggTTTGACAGAGGACTGACAAAACAAGGATATGTTGGAGCAACATGGcaaaaacaaagacatgaaTTCTCCCCTCTTGAGAAAGAGTGAATTTATCCTCCTTACCTCTTGTCCCAGTAGCGGCCGGGCCTCCAAGACTTTCTTCACCTTGTTCTCCTCTTTGACAGGCAGCAGGGACTTGAGGAACTTAGGTGGCTGAGGGGAGAGGACTTTGAAGGGGCTGGAGTTGAAAAATGAAGGGCTGTCTGGAACCAAACCTGTGTGGTTGCATTCAGAGACCTGGTAGCTGTCGAGTGGTCTCTGTAGTTTGGTGGAGCGAGCAGACACACAGCcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98714 lncRNA upstream 220280 19820235 ~ 19820591 (+) True G73836
TU98646 lncRNA upstream 391964 19646975 ~ 19648907 (+) False G73779
TU98640 lncRNA upstream 401412 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA upstream 403989 19634873 ~ 19636882 (+) False G73776
XR_005639810.1 lncRNA upstream 415260 19614503 ~ 19625611 (+) True LOC120562701
TU98936 lncRNA downstream 161467 20207847 ~ 20209327 (+) False LOC120561838
TU98940 lncRNA downstream 169827 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU99044 lncRNA downstream 268104 20314484 ~ 20318117 (+) True G74067
TU99041 lncRNA downstream 275950 20322330 ~ 20325908 (+) False gra
TU99064 lncRNA downstream 293961 20340341 ~ 20340927 (+) True G74081
XM_039806251.1 mRNA upstream 52124 19978757 ~ 19988747 (+) True gsdmeb
XM_039806956.1 mRNA upstream 63877 19947456 ~ 19976994 (+) True osbpl3b
XM_039806957.1 mRNA upstream 63877 19947456 ~ 19976994 (+) False osbpl3b
XM_039806958.1 mRNA upstream 63877 19947456 ~ 19976994 (+) False osbpl3b
XM_039805300.1 mRNA upstream 95696 19942987 ~ 19945175 (+) True LOC120561951
XM_039806419.1 mRNA downstream 42485 20088865 ~ 20093308 (+) True si:ch211-269k10.4
XM_039806951.1 mRNA downstream 124236 20170616 ~ 20178125 (+) True brd9
XM_039806952.1 mRNA downstream 124236 20170616 ~ 20178125 (+) False brd9
XM_039806953.1 mRNA downstream 124352 20170732 ~ 20178125 (+) False brd9
XM_039806233.1 mRNA downstream 132204 20178584 ~ 20184495 (+) True zdhhc11
TU98645 other upstream 391360 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 881876 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 881876 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1294196 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1387234 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 961653 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1356747 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1552675 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1723168 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 2086198 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile