RNA id: XM_039805128.1


Basic Information

Item Value
RNA id XM_039805128.1
length 3076
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC120561838
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20192690 ~ 20209327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTTTGGCCCAGTACCACTGTCTCCCACACGTGTCTGAGATAGAGAATGTGCCAAAATGTGTGCGAGGTCGCGGTGAGAGAATTGATCGTTTCTTCTAAGTCTCCGCCTCTCAAAGCACCAAAAAGATGCAACGTGCTCCAACCGCTTGTTTTTATCAGCGCTCCACTAAACACTGTGGCACCATCACCGAGGCACGAAGCAAACAGCTCGTCGCACACggcagcagccaatcagcggGCTGGTTTCTCTTCAGCATCTCGGAGGGACTGAACACTCTGTCAAACTCAGCTCAGGCAGCAGGCAGGAAAGGGATTTCAAGACTCCGCGACGCGCAATTATGGTTTTGTGAACTTGACAAGGAGGTGGAGGATTGCATCACCAGcacaaagagaaaacaaaagtcaGCTAATCCAAGCACTGCACAGAAGGAACCAAATTCCTGCACAAGCATGGCAAACCAGAAAGACAACATAGACGACTTTAAAGTCCAGACAGCCAAGCATCCTAACATGGGCTCGGCCCCTTTACGGCCGCACAGTGAACAGTCTAAAGACCGGTTGTCCAAGAGGCTTTCAACTGAGTCTAATGGGACCAGTGAAGGAGGTGTGGGCTCGTCCACACCAGTGGAGGTGACTGCTTTGGAGGAGTCTTTTCGCCGCTTCGCTATCCACGGTGACACTCGCGCTACCGGCAAGGACATGCACGGAAAGAACTGGTCCAAGCTCTGCAAGGACTGTGGCGTGATTGACGGCAAGAACATCACCCTCACTGATGTGGACATCGTCTTCAGCAAAGTCAAGAAGAAATCCTGTCGCACCATCACATACGACGAGTTCAAGATTGCACTTGGAGAGCTGGCCAGGAAGAAATATAAAGAAAGGACTGGAGAGGAGGCTGAGGCCGAGGTCTTCAAACTGATTGAGGGGAAGACACCTGTCATTGCAGGAGTCACGAGAGCCGTGGCGTCCCCAACAGTGAGCCGTCTTACGGACCCCACCAAGTTTACAGGGTCACACAAGGAGCGTTTTGATGACACTGGTCGCGGGAAGGGTAAGGCAGGACGAGTGGATATGGTTGACACTTCTGGATACGTCTCGGGGTACAAACATCGAGGGACATAtgaaaagaaagtgaataaataaACCTTACCgtgggcaaactcatgtgagGGCGAGGATAAGGAAATAGACATTTGATCAACTACTATGATACTTTTCTATTAAGAGTACTCAAAGAAAGCACAAAAAAATAGCATTTCATATATTTTTCCCAGCcatcaattgtgtgtgtgtgtgtgtgagagagaggtttTTGAGTTCCTCTCTTTTAGAAGTGTGAGAACTGGAAAACTGTTTACATCTATTTTTACAAAGTCATCACCAGCTGGTACATTCCTGTCTGATAGCAAGTTACTGCCAAACACTGAAGCGAACAAACGAGAGAAAACTGCTATGCTATGAATACTGAAGCTTTGTTGTAATGATAGGGCCTTATATTTATTGAGCACAATGAACAACATGCCAAGAAAAACAGGCGTGGGACAACAGTTTGATGAATTAACGTTGCACTTTTTAATGGAAACTTTTTGaatcccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagtgtaTATTTGATTTGTAGTTTCAATGAGAATTAGCTAATTTTTGACACGTTTTTTGAAATCTTAAATGGCTCCATTCTTCATTGTTGTCTGTCTGCCATCCCCACTTGTCAACTGTTATTAAGTCTTAAAAAATCTGCTGTTAATTTTTTTGTAAGCTCACACTGTCATTTTAAGAATTTGCCTTCAGCTCAAACCAAGAAAATATATTAAGGGTTTTGTCAACTtgtattcatgtttttgttgcaaAATGCAGCATAGTTAACGTTAGactgaacattttttttacctctgtGATATCTTCTTACTTTTGTGAAtatgtaaaacataaaaattcCTACCACGTAAACCTTTTAAATATGCCTGcttataacaaaaaaatacaataggAGTCTTGGAGAATCTATTTTCTCCTACAATGTTGTTATTCAGACCACAAACCATTTTGCTAACATGCATTTTGAATTTTAAGTTGTTGAAATTCAGCTGAAGGAAGCTCTAACCATAGTAGATGAGCTCAGTTGTACAAGattgtatttttaacattttactaTTTCCTCATGATTTCTATACAGTAGTTCTAATATATTTGTGGTGAGATTGTGTATATTCTAAAATCTTATAGCCCCATGGCTTAATTTATGACACTGGCttcatatgttgtttttatgtattgCTGTACTTTGTGCATGTTTATGTATATTGCATTTGATTCAGAAGCATATAGATGACAGTAGGAGTTTGTCATATCTTATCTGAGCTGCTGTGAGGACAGACTACTGGACAGACTTAAATATtttcttgcaaaaaaaaaaaaaaaaaaagtgtaagtgTAAGTGATGGAATTGCAGGATCATGATGAAATCTTGTATTGCTTGAAATCAATATGTATCAACTTGTACATACAAAGTCAGCTATGCTCCAATGCTATTATTATAGTTGTCTGTTGGTAAAGATTTAGAGTACCTTTTATGTGTGCTACTGTCATCCAAGGCACAAATTCAACTGAAAACAGAAGCAGGGTTTTACTGTTGTATCCTTACAAATTAGATAAAGGGAAAATTGCAAAGAAGTAATATTTTGTAGAATATTTTTCCAACATAGTGACAGTGTCACACACTACCTGTAGCGTCAGCTGATGAAGAATCATGCATCAAGTGCAAAACTCGCAGCTATCAGTGTGTTAGTTTTCATTTGCTGCAGTAGCTTGATCTGTTCTCTGTGCTTAATGCCAAATACTGTGCACCTTTAATGTGGAGGAACATATGgtcttatttgttttttttcaaataacttTTAATGTACTATTGTGCCCTGGTGCATGCAGTGTGTTCTTGTTCTTTACACCTCTTAATGTGTGTTCATGATTTGTAGTGCAttactgaaaaataaaaacaaagtataGGGtgtcagtcaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98764 lncRNA upstream 140684 20019109 ~ 20052006 (+) True G73871
TU98775 lncRNA upstream 146310 20040871 ~ 20046380 (+) True G73881
TU98714 lncRNA upstream 372099 19820235 ~ 19820591 (+) True G73836
TU98646 lncRNA upstream 543783 19646975 ~ 19648907 (+) False G73779
TU98640 lncRNA upstream 553231 19634873 ~ 19639459 (+) True G73776
TU98940 lncRNA downstream 6947 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU99044 lncRNA downstream 105224 20314484 ~ 20318117 (+) True G74067
TU99041 lncRNA downstream 113070 20322330 ~ 20325908 (+) False gra
TU99064 lncRNA downstream 131081 20340341 ~ 20340927 (+) True G74081
TU99077 lncRNA downstream 193563 20402823 ~ 20423897 (+) True G74091
XM_039806233.1 mRNA upstream 8195 20178584 ~ 20184495 (+) True zdhhc11
XM_039806951.1 mRNA upstream 14565 20170616 ~ 20178125 (+) True brd9
XM_039806952.1 mRNA upstream 14565 20170616 ~ 20178125 (+) False brd9
XM_039806953.1 mRNA upstream 14565 20170732 ~ 20178125 (+) False brd9
XM_039806419.1 mRNA upstream 99382 20088865 ~ 20093308 (+) True si:ch211-269k10.4
XM_039805119.1 mRNA downstream 5328 20214588 ~ 20226991 (+) True si:ch211-257p13.3
XM_039805120.1 mRNA downstream 5328 20214588 ~ 20226991 (+) False si:ch211-257p13.3
XM_039805121.1 mRNA downstream 5328 20214588 ~ 20226991 (+) False si:ch211-257p13.3
XM_039806943.1 mRNA downstream 32344 20241604 ~ 20275511 (+) True nbeal2
XM_039806944.1 mRNA downstream 32344 20241604 ~ 20275511 (+) False nbeal2
TU98645 other upstream 543179 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1033695 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1033695 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1446015 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1539053 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 798773 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1193867 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1389795 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1560288 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1923318 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile