RNA id: TU98940


Basic Information

Item Value
RNA id TU98940
length 1133
lncRNA type sense_over
GC content 0.38
exon number 1
gene id si:ch211-257p13.3
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20214588 ~ 20226991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAGCAGTTATTATTGAGCAAAACAATTAGGGCTGAGATATATGGAAAAATGAAAAACCAAAGTCAAATTGTCTGCATGGTAATGGAAAGTCAAACTGAAGCTAGCATTTCCCAGGTAGTACCAATTCAATCTACTTTATCGTAATTTACAGTATCTGCTTAGCATAGACCTTGGCTGAACTTCATATGAACttagattaaataaaagcacagGGTTAGACAAGACATGGATACCACTGAAAAAACTAATTTGCATGAGAGTACGTGATCACAGTTTACAACTGATATCCCATGGTGGCATTATGCATCACTGTGATGCAGCAATGAACTTTTCAGACATATTAGAGTGCCCTGCTGACATCTATTATGCTGTTCAATTTGAATTTATAATGTAGCCAGCATGTGGGCGTTTAAATTTGCTATGTGATCATTTCAAAGAATGTCTAGCAGGCTGTACTCAATCTCCGGCCAGTGACACCTTCCACACATCTTTCAAACAGTTTTATTGTTGTCGATTCCAAAAAACATCCGGCTGCTTTAGAGTCTGGGTCCTATTTGTTCTGCAGCTTCAGCAGTATCACTGTTTAAATATCTGCAGTGGTCTAAGCTCTTGGGCCTGCTCCTACCTCATCATGTCCATTTGTTACTTAACAGTGCACTTCTTTATTATTACTTCCTTGGTTTTTGATGGCTATGATGTTAACAGAAATGACATCATCAGTTTAACTCTTTGTCCACAGTGTTGTCCTTGCAAGATAATATTCCGTAAAAAGATGTGTAGTGGACACTGCAGATTCTCTCTCAGGATTTCAGAGTTGTGAGCAGCTGCCTCAGcagttttactgcagtaaattAACAAGTCTCTGTGGCTGTGTTCCTGTCTGTGAGACAATGCCTTTGTCAGATCTCAGGGTAAAGGTGGACAGGGACATTTAAAAGGTACTGTATTCAATAATTATGTGCACATATGTGAGTTTGGGGTGCCAGAATGATCATGATAATTGTGCTGCCTGTGCTTTTTTTCCCGTAATGATTCATCATTGAGTTCATGTCTTTTAAAAATGTCACGTTTTACTTCTATGTATTCTATTTAATTGCttttgtaacaaaaatatgaatatgTGCTAAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98936 lncRNA upstream 6880 20207847 ~ 20209327 (+) False LOC120561838
TU98764 lncRNA upstream 164201 20019109 ~ 20052006 (+) True G73871
TU98775 lncRNA upstream 169827 20040871 ~ 20046380 (+) True G73881
TU98714 lncRNA upstream 395616 19820235 ~ 19820591 (+) True G73836
TU98646 lncRNA upstream 567300 19646975 ~ 19648907 (+) False G73779
TU99044 lncRNA downstream 97145 20314484 ~ 20318117 (+) True G74067
TU99041 lncRNA downstream 104991 20322330 ~ 20325908 (+) False gra
TU99064 lncRNA downstream 123002 20340341 ~ 20340927 (+) True G74081
TU99077 lncRNA downstream 185484 20402823 ~ 20423897 (+) True G74091
TU99110 lncRNA downstream 258825 20476164 ~ 20476367 (+) True G74116
XM_039805128.1 mRNA upstream 6947 20192690 ~ 20209260 (+) True LOC120561838
XM_039806233.1 mRNA upstream 31712 20178584 ~ 20184495 (+) True zdhhc11
XM_039806951.1 mRNA upstream 38082 20170616 ~ 20178125 (+) True brd9
XM_039806952.1 mRNA upstream 38082 20170616 ~ 20178125 (+) False brd9
XM_039806953.1 mRNA upstream 38082 20170732 ~ 20178125 (+) False brd9
XM_039806943.1 mRNA downstream 24265 20241604 ~ 20275511 (+) True nbeal2
XM_039806944.1 mRNA downstream 24265 20241604 ~ 20275511 (+) False nbeal2
XM_039806942.1 mRNA downstream 24758 20242097 ~ 20275511 (+) False nbeal2
XM_039806948.1 mRNA downstream 61154 20278493 ~ 20287448 (+) True nradd
XM_039806783.1 mRNA downstream 96936 20314275 ~ 20321879 (+) True rbm12bb
TU98645 other upstream 566696 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1057212 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1057212 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1469532 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1562570 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 790694 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1185788 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1381716 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1552209 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1915239 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile