RNA id: TU99064



Basic Information


Item Value
RNA id TU99064
length 329
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G74081
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20340341 ~ 20340927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CGGTCACGTCTCCGTTTCTCAATAATCCCTCTGCGCCTTTTTCTGGCTTGGACTTGTGTGGTTGTGGAGGGTGACATTGAGCCGTGAGAATCAAGTTGACCATTTTCGTCGCCACTATCCTTCTCCACCTCAATATTGTCGTCCAGGTCGCTATCCGATGAGCTGTAATTGTGGCTTCGCTTCATTTTGCTTCCAAGCATACAGTGATCAAAAGTAGCCTACTCCTTTCAGAGAACGCTCCGGTAGTGCACTGACAGCAGAGGGTCTGTGCAAGAGTTTAAACGTCAGACCTTCTTCTGCTCTGATCATTTTCACACCACGGAGAGGGG

Function


GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism
ko04726 Serotonergic synapse

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU99041 lncRNA upstream 14433 20322330 ~ 20325908 (+) False gra
TU99044 lncRNA upstream 22224 20314484 ~ 20318117 (+) True G74067
TU98940 lncRNA upstream 123002 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU98936 lncRNA upstream 131014 20207847 ~ 20209327 (+) False LOC120561838
TU98764 lncRNA upstream 288335 20019109 ~ 20052006 (+) True G73871
TU99077 lncRNA downstream 61896 20402823 ~ 20423897 (+) True G74091
TU99110 lncRNA downstream 135237 20476164 ~ 20476367 (+) True G74116
TU99113 lncRNA downstream 143783 20484710 ~ 20484943 (+) True G74119
TU99115 lncRNA downstream 167806 20508733 ~ 20520082 (+) True G74121
TU99159 lncRNA downstream 259410 20600337 ~ 20605105 (+) False glipr2l
XM_039806789.1 mRNA upstream 2747 20333253 ~ 20337594 (+) True stmn2a
XM_039806788.1 mRNA upstream 8612 20326946 ~ 20331729 (+) False upp1
XM_039806786.1 mRNA upstream 8612 20326948 ~ 20331729 (+) True upp1
XM_039806787.1 mRNA upstream 8612 20327193 ~ 20331729 (+) False upp1
XM_039806785.1 mRNA upstream 14380 20322572 ~ 20325961 (+) True gra
XM_039806793.1 mRNA downstream 10052 20350979 ~ 20352241 (+) True fabp4b
XM_039806792.1 mRNA downstream 11450 20352377 ~ 20358197 (+) True LOC120562869
XM_039806791.1 mRNA downstream 27177 20368104 ~ 20380083 (+) True LOC120562868
XM_039805895.1 mRNA downstream 107300 20448227 ~ 20475554 (+) True si:dkey-12j5.1
XM_039805896.1 mRNA downstream 107300 20448227 ~ 20475554 (+) False si:dkey-12j5.1
TU98645 other upstream 690830 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1181346 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1181346 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1593666 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1686704 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 667106 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1062200 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1258128 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1428621 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1791651 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile