RNA id: TU99160


Basic Information

Item Value
RNA id TU99160
length 6101
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G74145
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20607340 ~ 20614707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGCCTCTCCAAATACAATGTAAATGTCAGATGCTGGGCTTTTGAAGACATCTGGTCTGCTGATGACAAACAAGATACTCTTGGACTTCCTAATGGTAATTCTGGTCACACCATGGACTGGCTTTAGACCAAGTTTAGACATGgcctacatacacatacagcagcagagagagtgagagagaaaataacACAAATGAAACACTGGTGTAAAATACACTCCACTTGATATAtttaaatacttttatacaGCCAGTAGTCAGACCTTGCGGGCCTTCTTCTCACTGCGGCTCTGTTTTGGTCTGTTTAGCCCTTCATCTGCAAAGGAGACAGACTGGGGCTCTGATGGTCTCAGTGGCTCTGACTCCTCCAGCTCAGGCACTGAGCCCTCACTCTCGGACTCATTACAGGAAGCTAATATGGAACAATTGTTTTGGAAAGAAAGGTCGATCTCTTCTGCAATCTTGTGGCTGTGGTTGATTGGACAGCCTGACTGTCTGTCGGATATTTGGTGGGCAGAGAAAGGCTGTATTTCCCGCTGATTGGATGGACAAGACTCTCTCTGCATGGCTCCATTCCTGTTTCCTGCCACTCCTCTGGCCTGGGATCTGTGACCACGTCGAGGCATTCCACCATCatcctcactgtctgtctcctcCTTAGCCAAACTGGGACCTCTGCACCTGTCTTGTGTGGTCCATGTGCAACCTTGCTTGATTTCTTTGTGAGGCTGGATGTTGAGATTAGGCTGAGACTGGGGATGGAAAATAGAGTCTGGAACACCTGCTGAATCGAGAGTCTCAGGCGCTGGTGAAGTTGACTCCTGGGTAGGCTGGGACAGGCTTAACACCATGGCAGTGGAGAATGAGGGCGAAGAGACACTTGTGGTAGAAGTAGTTGATGCAGAAAGGACAACAGTGACCTCTTGGAGGTTGTTGTGAGGAAGAAATTGGGGATCAGGGGCTTCTTGTGTCCGGGGGGAGGTAGAGCAAAGCGGTGGGGTGGTGTGGCACATGGACTGTGAAGGCTGTTGCTGGGCTGAGGGGACAGGTTGGGATTCCTGCACAGGTGTGGGAAGATCATCCTCTGGCTCTGTTGAGGAACATGGtagaggggaggaagaggaaacagGAGATGGTGAGGAAGACAGTGGAGTCAGAGAGTATGATAAGGTATCATGGGTAGGTGGGATTTGGCCAGCATCTATGTTGTTATCATTAATATCCACTGTGATTCCTCTCTGACTATCAGACAGGGGTCTGTTATCAAGCACTTCCTGTTCCTGATGTAATTCTTGGTTAATTGGTAAGACAACATTGAGGTTGTCTGGGGTATGTGTGGTAGATTTGCAGAGTCCATGGATAGGAATTTTGACCTCAGGACTGGGACTGTTATCCCCCTGTATCTGTGAACCAAACTCATCTTTGTTTGTCCCAGACGTTTTCTGTTGACAGTCCGACGATGAAGCTTTGTTGTTTGCCTTTTGGCCTGTCTTAGTTTCAGAATTGTCTGTGTCCCCTTTTGACCATCCATCTGCTGTGGTATTTAATGGAACAGAGGGTTTCTTTGGATCATCAACAGATTCAGGACTAGAGTCACCATGATTGCCTTTTTGGGATGCCCTGTGTTTGTTCTGcttccctctcctccctttctTAGCAGCAATTGTTTTTTCTGTGCAAAGTTCCCCTTTAGGGGTGTGACACGGAAAGTGCTCTGGGACATTCTGTGCAGGAGaggtttttctttcctttttgttCTTCCTATCCTTTTCCTCACCTCTCTTTTTTGCCTTCTCTTCTGCTTTTTCTTCCTCGTCTTTTACCCCTGAGTTACTAACAACACATTGCTGTCCTCGAAAGGCATCTGTAGTCTTTGGTTCATCAACAAGTCTGTCAGTCACAGGACTGACATCACCTTTTCTTTGGCCTTCAGTCGGAGGCTTCACTATCTCTGGTTCTGACTGGGAACCAGAATTTTCCATCTTGTCTTGACAAGCTCTACTTGGTCTGGATTCGTTAGATTTACATTTAGGAGTAAAGGAACCAAATGATCCGTGTAGCAAAGAAAATGCTGTATTACTCTCTGGAGTGATTGTCTGACACTCTGGACTAGTATGACATCTTGACTTGGCTTTATCTGGTGAACTGAGATTCTGGTTTGTTACAGCTTTGTTCATGTGAGTTTCAACTAATGGCACTGAGATGCTACAGGCATCTTCCTTTGAGGATGGTGCCTGTGTTGTGTCTGATGCCTGGTTTATGGATCTGTCTTTTTGTTCCCCTTCATCTGGAATTGTGTCAGAAACCTGAGGTGGCATCTCCTCAAGTGGAATATTAGACACAGACTCTCTAACACTGACACTCACACTCTGGGGTCTCACTTCCTCTGATAGAGCATTCAGACTTTCACACATGGCTACTTCCAAGGAGTCAAAGGCAGagtcattgttattgttagAATTCTTCCAAGTttcttgtatttgtgtgtgcgtgttatcTCCATCATTGTCTGGATTTAGATTACTGACATCATCCTCTGGAAATCTGGAGCTTCCATCCTCCCCTCCGCCTGCTTCTGAGATCTCCTCAATGGACTTCCAGCTAGCCAAGTTGGACTCAGAAGTTCCCTCTCCTACTAATTCTTCATCCGCCATCTGGTCCCTCTTTCCACACAGACTGTTGTTGTCTTCCTCATCCAGAACAGAACCCAGAACGTTGTCATAATTTTCACACACTTCCACAGCCGTCTGTGTGCTTTGGCCCTCTGTGTCACACATGAGCAGACTCTCATACCTCTTTCCCAGAGACAGGGAGAGTGACTCCCCTGCTCCCCACACACCAAACCCAGCCCCTGATCCTAATCCTAGACCGAACCCCAGCCCCATTCTGTCATCGCACCACGCCCCAGCTCCAGGACGCATCTCCCTGCTCCCGCCCCTGCTGTCTGTTTCTGAGTTTTCCCTTTTGGGCGAGATGGCAAGGGGGTAGTGTGGGGATCCAACAGCTCCCAGCACCCCTTCATCAGTACTCAGGGTGTTTTCTCTCAGGTTCTCCTGGGCAGAGTCACCAGGGGTCAGGGCCAGATTGTCAGCAAGTTCTGAGATGACCTCTGGAGAGGCAGAAACAGGGATATTACTGGGGTTGGGACTAGGTTCTTTGGGgcaggagagaagaagaacaCCTTTATTCAAATCATTGGTGGCAGAATCAATGCTTCTACACTCCACACTCATAGACTCAGCTGAAGTATTCCCATTCCTCTGGTCAAGCTCAATGTCAGACTCCCTGTGAATACTTGTCCTACATGTGTCCTCTGCCCCTCCAGGCACATCTGATTTATTGGAGAAAAACTTTGATAATACAAGTCTACTTGCTCCTACAGCCCTGTGGCTTTCTGGCTGATAATGACGAGGCTTGATGAGCAATTTGAAAGAGTCTCTTTCTGGTTTTTCTGGGGATTCCCCTCCTGAATAATCATTGCTCTCTTGCAAATCATCATCTTTCATCTGGGGATTTTCCTCAGCCAATTCTTCTGGAAGAACTGAACTGTTAAGGTCTAACATCTCCTGTGCAGAAGCGGCAGAAGGAGGAGAGTTGTGGAACTCAACAGCAGGGTCAGGTGGAACATAAATGACAACAGTAGTGGTGGAAGGGTTCACATGAGAGCTGTCTTTAGGGTGCTCAAGAGGGTTGGAAGAACCAGAGATATCCATCATCTCACTTTCACTCCCACTTTCGTCCACGTTGCTGGAGGACTCTGGTTGACAAGAAATAGCTTCTGAAGGACCGAATGGTGTCTGGTGATCCACTGGTTTGTCTGTGCTCATGTGCATGTGCAAAGGTTTTGTCTGATCTATTCCACTGGTTGATTCCAGTTCAGGTTCATCCAGGGGTGTAGGTTTATCCAGAGCAATGGATTCAGAAAGACAGGTCGTTTTGGGGGAATCCACAACTTTGTCTGTTGTCAGTTGTGTGTGCAAAGGTTCAGTTTGACCTGTTCCAGTGGTAGGCCCCTGTTCAGGTTCTGTTTGGACTTCAGTTAGATCAAGTGCATCCATTTGTGTGGGTTCTATTGATTGTGCATGCCTCTCAGTGCTGTATAGACGTTCATCTTCCTCCCCATTATAGGAGGCAGAATCTAATGAGTCATCTGTATCGTCTTGGAAACAGAAGGCTTCATCCAACCCCTCATTGATAGATGTCTCTGAAAGTGAATGAAGGAAGGATGCTGAGCTGTCCTCCTCTGTAGGATCCTGCACTGCTTTGTGATCACACTTCTCATCAGCCTCTTCttgctcttcttcttcctcttcttcctcctcttctaccACTTTAACCTCTACCTTAGCTTCCTCACCTGCCTCATCATGCTCTtcaccatcatcatcttcattatTTTTATCATTGTCACCACCGTCAGCAGAGCCATTAGCATTGCCATCACCATCGTcgtcataatcataatcatcatcatcatcatcatcctcttcttcatcatcatcgtcatcttCGACATCTGCCTCCTCTTCTCCTGCTGCATAAGCATTAACATCCTTCCCTTCATTGATGTCATTACCTTCTCCGATATCATTCTCATCCTCTGTGGGGAAGAGAGTGATTTCCATTGAATCAGCCTTAAAGATAAGGCTGGTGTGGAGGGGAAAGGAGATGAGGGAGGCAGGGATCATCATTTCCTCCACTGGTATATCATCAGCACAGGCTGCCTGGGAGAGCATGAAAGAACTGGGTCCGAACCTACCAAAGGCTCCAGGACAGAAGGCATCCAGGGGGCTGACAGGTGAGTCAGGGCTAAGGCTAGATGAGGCCATGGTCATGCTCTCTGTGTCAGGAGTCAAGGCAGTGGAGGGTCGGTCTGGGTGATCATCCATCTGTCCATAATGTTCCTCTGATACACATGCCTCCAGATGAAGTTTCAGGCCTGTCTGCAAGGCCCTAGAGTACTCTGCTCTCCCTGCACTAGTCTCTTCCAGTGGGCAGAGTGAGCTTTCAGACTCTCCCCCATCTTCCTGGGAGTCAGTGCTACGGCTGCTACTGCTCCTTAAAGGAGATGTATTGTCAGTCACCCAGCAAGGACGACAACTTTCTCTGGAAATCTTaatctcttcctcttttggAGCCTCTTCCTCCTCGAGGATCACTGTCCCTGTTATACCCATCCGTGAATTCATGACAAAATCATCAGGACGGTACAGGCAGAAGCCTCCTGCCTTTTCCTCCTCCCGTTCTGGACAAGCTCGTCCCTTTTCCTCCGCAACTTCATCTCCAATCTCCGATAATGAGCCCACAAAGCAAGCAGGGGCCTCCTGTGCTTCTTCTGTAAGGAGCAGGTTAGGAGAAGTGGAGGGGGAGGTTGAAGATGTGTAAGAGGAGGTCCAGCTGCCTCCCTCTGCTGTGATATAAGAGCCAGAGGGAGAGGTGAGAGGGGAACAGAGGTCCTCGCTATCTGAGGGAGAGCCAGGGGAGAGTGGGCAGACTGGAGAACCAGGATATGAATGATGTTTAAGGTGCAAAGAGCGGGAGGCCATCTTGATTGGGGTGGAAGGAGCTGTATAGTATAGGTCAGGGTCAAGAGATGAGGGCACACCCACTCGTAGTGGGTCAACAGCATAGGCTGGCTCAGAGAAGGACAAAGCAACTGGACAGACGAGCTCAGAAAAAGAAAGGGAAGGCACTTCGTCTTGAGAAAGGGTTTGACCCTCTTCCTGGCTGTCTTTCAAATTGTCATCTGTTCTGATTGGCTCTGGGGAGAAAGAAGAAGGGAATAGGGGGTTCTGAAAAGGGGAAGGGAGTATGATTGGGGGCTGCACAGGGTCTTTTTGCTGATCCTGCTGTTTTTGAGGGATTTGGGCTTGGTTTTCCTCTTTGCTGGTTTCCAGCTGGGTCTCTTTTGCTTGTGACTGAGGACCTGAAAAGCTTGGAATAGCTGGCAAAGGGATAGCCTGACCACTTGGCTCAACCATGGGTTTTCTTTTCTGGATCTCTGTTGTTTTGAGCAGTGTCTCTTGACCCATCACCACCCTTGTGTCAATGGTCTGTGGTTCTTGATAGTCACTCTCCACCTCAGAACCAGTCAGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99159 lncRNA upstream 2235 20600337 ~ 20605105 (+) False glipr2l
TU99115 lncRNA upstream 87258 20508733 ~ 20520082 (+) True G74121
TU99113 lncRNA upstream 122397 20484710 ~ 20484943 (+) True G74119
TU99110 lncRNA upstream 130973 20476164 ~ 20476367 (+) True G74116
TU99077 lncRNA upstream 183443 20402823 ~ 20423897 (+) True G74091
TU99240 lncRNA downstream 217616 20832323 ~ 20836748 (+) True G74204
TU99241 lncRNA downstream 225853 20840560 ~ 20841769 (+) True G74205
TU99244 lncRNA downstream 276977 20891684 ~ 20892655 (+) True G74208
TU99243 lncRNA downstream 278432 20893139 ~ 20893942 (+) True G74207
TU99280 lncRNA downstream 461604 21076311 ~ 21222895 (+) True G74230
XM_039806762.1 mRNA upstream 2175 20600323 ~ 20605165 (+) True glipr2l
XM_039805895.1 mRNA upstream 131786 20448227 ~ 20475554 (+) True si:dkey-12j5.1
XM_039805896.1 mRNA upstream 131786 20448227 ~ 20475554 (+) False si:dkey-12j5.1
XM_039806791.1 mRNA upstream 227257 20368104 ~ 20380083 (+) True LOC120562868
XM_039806792.1 mRNA upstream 249143 20352377 ~ 20358197 (+) True LOC120562869
XM_039805369.1 mRNA downstream 16751 20631458 ~ 20641851 (+) True LOC120561989
XM_039805826.1 mRNA downstream 289146 20903853 ~ 20960657 (+) True galnt1
XM_039805825.1 mRNA downstream 289147 20903854 ~ 20960657 (+) False galnt1
XM_039805828.1 mRNA downstream 289147 20903854 ~ 20960657 (+) False galnt1
XM_039805829.1 mRNA downstream 289150 20903857 ~ 20960657 (+) False galnt1
TU98645 other upstream 957829 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1448345 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1448345 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1860665 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1953703 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 393326 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 788420 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 984348 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1154841 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1517871 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile