RNA id: XM_039805670.1


Basic Information

Item Value
RNA id XM_039805670.1
length 946
RNA type mRNA
GC content 0.48
exon number 4
gene id sec61b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21008013 ~ 21011414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGTCGTGTCCTTTTTAGACAAGCGTCAGCTTTGTGGGATCTCTTCTCAATTTTTGACCAAATCACACACCGACTGTCTGCTGTTCATTGGAAGTGGACATCAACTTGAAGAGGGGCTCAGGGTTTCACCTTGcatcagaaaaataaaacaaaatgCCTGGACCAGCAGCAAGTGCAACCAATGTTGGGGCATCTAGCCGTTCCCCCAGTAAGACGGTGGCTCCCCGTGCAGCAGGCTCCACCGTCAGACAGAGGAAAGCTACCAGCAGTGGTACACGCAGCGGTGGCAGGACCACCGGATCGGCAGGCACTGGCGGCATGTGGCGCTTCTACACAGAAGACTCGCCAGGCCTCAAAGTCGGCCCCGTGCCAGTGCTGGTGATGAGTTTGCTCTTCATTGCATCTGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCTTAAACTCCACCCGATGACCTCTGACCCTCCACCTCCATCTTTTTAACACATCGGACCTGGACCAAACAACAAATGAACAACAATCTCACTCCCCTGGTTCCCTTCTGCACTTTCACTACAACACCCACAGACATACAAGACAcacaaacttgtttttttatttaaccatttCAGTACATGATCATCATCTGCATTGATGTTGGTATCCACCCTTTTGCCCTTCCTGTATTTTTAAGATCTGAAGGGGTGAACAGGAGGGAGTCACGCTCACCCATCTCAGTTGAAATGTcttagtttgtatgtgtgtgtgtatgtggcccTCCCTCCAAGCGGCAGTATGTTCCCGCCACTGCTGCAAAAAGGTTCAGTGCAGTACCTAAGGACATTGATGTTTTCAGGCCCCAGCAAACATTTCCTCTTGTAGCCTGAAGTGCATTTTTTGTTAAAAGCATTTGTACAAATGTAATTGTAATATTGtacaataaaaaagtaaaaatcaa

Function

GO: NA

KEGG:

id description
K09481 SEC61B, SBH2; protein transport protein SEC61 subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99243 lncRNA upstream 114071 20893139 ~ 20893942 (+) True G74207
TU99244 lncRNA upstream 115358 20891684 ~ 20892655 (+) True G74208
TU99241 lncRNA upstream 166244 20840560 ~ 20841769 (+) True G74205
TU99240 lncRNA upstream 171265 20832323 ~ 20836748 (+) True G74204
TU99160 lncRNA upstream 393306 20607340 ~ 20614707 (+) True G74145
TU99280 lncRNA downstream 64897 21076311 ~ 21222895 (+) True G74230
TU99289 lncRNA downstream 89756 21101170 ~ 21156912 (+) True G74234
TU99287 lncRNA downstream 138975 21150389 ~ 21152512 (+) True G74233
TU99348 lncRNA downstream 231815 21243229 ~ 21243567 (+) True G74274
TU99365 lncRNA downstream 277757 21289171 ~ 21289375 (+) True G74286
XM_039805669.1 mRNA upstream 6371 21000271 ~ 21001642 (+) True LOC120562142
XM_039805826.1 mRNA upstream 47356 20903853 ~ 20960657 (+) True galnt1
XM_039806524.1 mRNA downstream 69472 21080886 ~ 21103601 (+) True nr4a3
XM_039806523.1 mRNA downstream 72099 21083513 ~ 21103601 (+) False nr4a3
XM_039806831.1 mRNA downstream 95424 21106838 ~ 21117093 (+) True stx17
XM_039806822.1 mRNA downstream 117936 21129350 ~ 21151513 (+) True invs
XM_039806821.1 mRNA downstream 118093 21129507 ~ 21151513 (+) False invs
TU98645 other upstream 1358502 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1849018 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1849018 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2261338 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 2354376 18652411 ~ 18653637 (+) False LOC120562819
TU99513 other downstream 391713 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 587641 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 758134 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1121164 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 1126151 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile