RNA id: TU99289



Basic Information


Item Value
RNA id TU99289
length 977
lncRNA type read_through
GC content 0.47
exon number 2
gene id G74234
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21101170 ~ 21156912 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tgcgtgcgtgcatgcgtctgtgtgtgtgtgtgtgtgtgggggggggggctggacACCCTGTTCTCTGCAGAATGAGTTAGTGTCACATTAAGCCTGATACGGGTGCCACAGGAGTTGCTAtgggcagcagtgtgtgtgtgcatgtgtttctaATTTCATTTGGCTGCTCACAGGGCCGAATAATCAGTTAATTGTTGAGCACTTTTGTTTCTGTCAATGTCTTAAATTGCAGGGAcaatttgtgtgtctgtgtgtgtgcaaatgtttataaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcatgtGCATGcgcgggggtggggggggggacaaaaaacaaaacaacagacagttctgtctgtctctgacgCACATGCTGATGTCAGAAGCCCTCAGACAAAAGGAGTCTTGTGATGGTGACTTGCTGGCTCTTTGGTTTCTATCCGCCCCCCTCCTCTCCTGGCTCCCTCTGTTACACACCAGCCTAACTATCCGAACATCCTCAGAGCAGTGATATGTACAGGCTTATTTCTTTCTGCCTCTGGTTGTAGTTCAGTTTTACAAAGTGGTATGGGGTGGGAAACATGGAGTTACACCGCCTCCTAGGGAAACTATGGTTCATAATTCATAATTCAGTAAAAAATGTTGTCTTTGGTAATCTGACAATTGTTGCTgcatttttgtattgtattgaacGGTTAATGCATATGAAAATTATTACGTATGGAATTGTACCCTTGTTTGTCCCTCTAATTGAGTGTTTGTACCGTAAAGCCTGCAGGCGTGTGTGTGCAGACTGTTGAGCAGGTCTTTATGTCTTCGAGAAGCGGCAGCCTGGATGGACAGGATAAGTCGTTCAGAGAGAGCAGGGTTACGGTGGCCCAGCTGGGACAACTGCACAGGAAGAGATGCCAACCATCGACACAGCACTTTACTcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU99243 lncRNA upstream 207228 20893139 ~ 20893942 (+) True G74207
TU99244 lncRNA upstream 208515 20891684 ~ 20892655 (+) True G74208
TU99241 lncRNA upstream 259401 20840560 ~ 20841769 (+) True G74205
TU99240 lncRNA upstream 264422 20832323 ~ 20836748 (+) True G74204
TU99160 lncRNA upstream 486463 20607340 ~ 20614707 (+) True G74145
TU99348 lncRNA downstream 86317 21243229 ~ 21243567 (+) True G74274
TU99365 lncRNA downstream 132259 21289171 ~ 21289375 (+) True G74286
TU99366 lncRNA downstream 132641 21289553 ~ 21290314 (+) True G74287
TU99367 lncRNA downstream 134130 21291042 ~ 21292380 (+) True G74288
TU99494 lncRNA downstream 177757 21334669 ~ 21335693 (+) False LOC120563169
XM_039805670.1 mRNA upstream 89756 21008013 ~ 21011414 (+) True sec61b
XM_039805669.1 mRNA upstream 99528 21000271 ~ 21001642 (+) True LOC120562142
XM_039805828.1 mRNA upstream 140513 20903854 ~ 20960657 (+) False galnt1
XM_039806827.1 mRNA downstream 4758 21161670 ~ 21167686 (+) True si:ch211-197h24.6
XM_039806828.1 mRNA downstream 4764 21161676 ~ 21167686 (+) False si:ch211-197h24.6
XM_039807238.1 mRNA downstream 15611 21172523 ~ 21183348 (+) True tmem67
XM_039807239.1 mRNA downstream 15612 21172524 ~ 21183348 (+) False tmem67
XM_039807240.1 mRNA downstream 15612 21172524 ~ 21183348 (+) False tmem67
TU99269 other upstream 89799 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1451659 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1942175 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1942175 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2354495 18744662 ~ 18746675 (+) True LOC120562824
TU99513 other downstream 246215 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 442143 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 612636 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 975666 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 980653 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile