RNA id: XM_039805135.1


Basic Information

Item Value
RNA id XM_039805135.1
length 2930
RNA type mRNA
GC content 0.45
exon number 17
gene id crot
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21403035 ~ 21415894 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAAAGGTTGCGGGGACCTCTATATACACTGCGCACAGCAACACACTAAACCTCACCACTGACTAATGGTATTTCTGCTGTGCGTGGATGCAGTAAGCTGCTACAGTCAACCCATCCTGAAGAAGTCTGAATTCCTTCCAGGGAGAAAACATGGATAACAATTTGTCAGAGTCTCTGCCAGAGAGGACCTTCCAGTACCAAAGTAGCCTGCCATCCCTGCCTGTTCCATTACTAGAGACGAGCCTTTCGAAGTACCTGGATGCAGTTCATCCATTTGCATCTGAGAAAGAGTTTAAGGCTACAGCGGACATTGTGAGCAAATTTCAAGCAGGTGTTGGCAAAGAGCTGCACCAGAAACTACTGCAGAGAGCCAGGACGAAGAGGAACTGGCTGGAAGAATGGTGGTTAGACGCTGCATATCTGGAGGTCCGCATTCCTTCTCAGCTGAATGTGAACTTTGCTGGTCCAGCGCCCTACCTGGAGCACTGCTGGCCTCCTGAAGAGGGAACTCAACTGCAAAGGGCCAGTATTACCATATGGCATACACTACAGTACTGGAACCTAATCCGCACGGAGAGGCTGCATCCTCAGAAAGCTGGCAAAATACCATTAGATATGGACCAGTTCAGAATGCTGTTCTGCACCTGCAAAGTACCTGGAGTAAAGAAGGACACCATTCGTAACTACTTCAAGACGGAGAGTGAGGGTCCGTGCCCCTCCCATTTGGTAGTGATTTGTCGCGGACGGATCTTCACATTTGATGCAGTCTGTGATGGACAAATTCTCACTCCTCCAGAACTACTCAGGCAGCTGAGCTATGTGAAAGAGCGCTGTGAGGGAGAACCAGAGGGAGACGGAGTGGCTGCTCTCACCTCAGAGGAGAGGACTCGTTGGGCACAGGCCAGGGAATATCTAATAAACATTGATCCACACAATAACACCATCCTGGAGATCATCCAGAGCAGCCTGTTTGTCATATCTCTGGATGAAACAAAACCCTACTCTACTCCAGAGAACTACACAAATTTGACCCTGGAAGCCCTTACAGGCAACCCCACCATCCGCTGGGGTGACAAATCGTACAATTCACTCGTGTTTGCAGATGGCACTTTTGGATCCACTTGTGAcCATGCACCATATGATGCCATGGTACTGGTGTCTATGTGTTGGTATCTGGACCAGCAAATCAAAGTTACAACAGGCAAATGGAAGGgctcagacacagtcagagccgTACCCCGTCCTGAGGAGCTGGTGTTTACTGTTGACGAAAAAGTCCAAAGTGACATCAGCCACGCCAAACGGCAATACCTTGAGTCGGTGCAGGACCTGCAGGTTGTGTGTTATGCCTTCACAGCATTTGGAAAAGCAGCCATCAAACAGAAGAAGCTGCATCCAGACACCTTTGTTCAACTAGCAATGCAGTTGGCCTACCAGAAAATGTACAAGAGGCCAGGAAGTTGTTATGAGACCGCAATGACTCGCAAGTTCTACCACGGCAGGACGGAGACGATGCGCCCCTGCACCCAGGAGGCTGTGAACTGGTATAAAGCCATGGTGGACCCCACGTGtgatGCTGATGCCAAGAGGAAAGCAATGCTGCTGGCCTTCAATAAACACAACAAACTGATGGGGGAAGCCCAGGAAGGAAAAGGTTTTGACAGGCATCTTCTTGGGCTGTATCTTATCGCCAAAGAGGAAGGACTTCCCACTCCAGATCTCTTCATGGACCCCCTTTATGCAAAGAGtggtggtggtgggaacTTTGTGCTGTCTTCCAGTCTGGTGGGCTACACTACAGTTCTGGGGGCCGTGGCTCCCATGGTGCATCATGGCTATGGCTTTTTCTATTGCATCAGAGATGACAGGATTGTGATGTCCATCTCCGCATGGAAATCTTGCCATGAGACAGATGCTGCGTCACTGTTCAACATCTTCTGTAGCTCCTTGCATGAGATGCTCCACCTGGCTACCACATCTCAGCTATAAGTACTCACACCAACACATTAATGCACACAAAGTTCACAAACCCTCCGTTAATAGCCAACGGCTAGCGATAGTTATGTTTGTTCTGAGCACAGATCAATGCAAAGGTACAGAATCcgcactgctgggtgttagccCCTGGCATTGGCATTAAAAAGTCTATCAACATTATTGTAGTGATGAGACTTTTAGTGTAGATTGTTATTTTCTGAGTATATTTTCTGATTCATGTGGAAATTATAttgaatgtttaattttaaatcctGCCAGTATTAATGCACATTAATTTAAAgataaggtgttttttttttttgtttttttttatgtttgtccCCCAGACAAACGGACACTGACTATTCTGAGGTGTGCAAATGAAGAAAATAACTTCTGGCTGCTTTGACTGTTGAACTTAGATTTTTCTGTAATACTAAAGGGCATTCCAATGAAACTCATAGAAAAATAAAGGTAAATAGGATTGATTTGcctttgttttatgttttagatTAGTGAAAATCTACAGAAATATCCAACAACAGTACTCAACTATTACATTGGACTGAAATTGAAAAATAGTTTTCCTAAGAAATCAGAAAAATGTGTTATTGGTTGTTTTACTTTTGCCTTTTATATGATCAAAATTATGCTCAACAAAAAGAAGTAATTAAAGTTTTGATAGTGATAGTAGGCGGGCACTAAAAATATAGTAATATGCTTCAGTGCAAACAGCCACACAGGTATAGGTTAGACGTTCCCTACAAACTCTTTGACTCTAAAAGTTTATTTGAACACGGTAACGTAAGTAGTGTTGAGGTCGCAGGACTACCTGTTGTTGTGGGTTTTGACAGTCTGGTAATTTGCCATCactatacactaccggtcaaaagtttggagtcacttagaaatttccattccactccattacagacagaataccagatgagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 69813 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 113126 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 115192 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 116131 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 161939 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 309055 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 620385 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 667789 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 674727 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 699723 22115616 ~ 22116026 (+) True G74729
XM_039805139.1 mRNA upstream 664 21403066 ~ 21404842 (+) False crot
XM_039807288.1 mRNA upstream 8980 21389889 ~ 21396526 (+) True nmt2
XM_039806311.1 mRNA upstream 18200 21361594 ~ 21387306 (+) True fam171a1
XM_039806312.1 mRNA upstream 18200 21369561 ~ 21387306 (+) False fam171a1
XM_039807316.1 mRNA upstream 68841 21331681 ~ 21336665 (+) True LOC120563169
XM_039807363.1 mRNA downstream 42606 21458499 ~ 21461211 (+) True LOC120563194
XM_039805795.1 mRNA downstream 51176 21467069 ~ 21478945 (+) True rundc3b
XM_039805788.1 mRNA downstream 69156 21485049 ~ 21491551 (+) True dbf4
XM_039805782.1 mRNA downstream 77521 21493414 ~ 21556018 (+) True adam22
XM_039805783.1 mRNA downstream 77522 21493415 ~ 21556018 (+) False adam22
TU99513 other upstream 903 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 394135 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1755995 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2246511 19148613 ~ 19158995 (+) False G73570
TU99582 other downstream 183162 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 353655 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 716685 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 721672 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 781901 22197794 ~ 22199818 (+) False kcnn3

Expression Profile