RNA id: TU99801


Basic Information

Item Value
RNA id TU99801
length 531
RNA type TUCP
GC content 0.52
exon number 3
gene id G74633
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21769548 ~ 21770286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCACTTCCACTTAACCCGGACCCTTTATTCTCAATTCCACTGAAAACccatacaattactttttatagGAGAAGACAATAAGCAGCACTTGTACCTCAGCCTCCAAGAAAGCCACTTTCTCCTCCAGCTCTTTGATCACACGGTCCCTCTCTTGGATCACCATGCGAGAGTTCTGGAGCTGTTCAATCATGTGTCTGACTTTCCTTTGTTGGCTTTTTAGCATGTCATCCAGATGGTGGATCTTTTCTTTGAGAATAGCCACCTCCTTTTCCAATTGCTCAGCcCTCTGATCCCCTTTCTGGCCCTCCTCTCTGATCTTGCGCAGTTCGCGCAGTTCGTCCTCGCGGTTGCGTATTGCCTCCCGCAGGCTGGCGCTCTCCTGCTCCATCCCTCCCAGCAACCTCTGGAGCTCGTCGATGCGCTTGTCTTTCCTCTCGCTGGCTTCCTCGGTGACCTTCAACTTCTCCTCCTCGTCGCTCAGATGCTGCCTCAGCCTGCTGCCTTCAGCCTGGAAGAgacacgcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639855.1 lncRNA upstream 43843 21724948 ~ 21725705 (+) True LOC120562851
TU99494 lncRNA upstream 433855 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 477168 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 479234 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 480173 21289171 ~ 21289375 (+) True G74286
TU99850 lncRNA downstream 265992 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 313396 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 320334 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 345330 22115616 ~ 22116026 (+) True G74729
TU99938 lncRNA downstream 349452 22119738 ~ 22121346 (+) True G74732
XM_039806487.1 mRNA upstream 1695 21764475 ~ 21767853 (+) True c7h1orf43
XM_039806488.1 mRNA upstream 1695 21765233 ~ 21767853 (+) False c7h1orf43
XM_039806135.1 mRNA upstream 90690 21668490 ~ 21678858 (+) True znf687a
XM_039807260.1 mRNA upstream 101717 21661202 ~ 21667831 (+) True LOC120563136
XM_039805029.1 mRNA upstream 111018 21639092 ~ 21658530 (+) True LOC120561789
XM_039805303.1 mRNA downstream 34788 21805074 ~ 21818222 (+) True she
XM_039807314.1 mRNA downstream 47767 21818053 ~ 21835351 (+) True chrnb2
XM_039807315.1 mRNA downstream 56340 21826626 ~ 21835351 (+) False chrnb2
XM_039807229.1 mRNA downstream 120243 21890529 ~ 21900652 (+) True flad1
XM_039807230.1 mRNA downstream 120792 21891078 ~ 21900652 (+) False flad1
TU99582 other upstream 166318 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 364945 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 758177 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2120037 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2610553 19148613 ~ 19158995 (+) False G73570
TU99947 other downstream 362292 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 367279 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 427508 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 515018 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 526562 22296848 ~ 22306152 (+) False rusc1

Expression Profile