RNA id: TU99938


Basic Information

Item Value
RNA id TU99938
length 1609
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G74732
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22119738 ~ 22121346 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagaaaattttacatgggggggcaaaggggtagcgagagatcttggtagggtggcaggggaagacggtacatggaaacctcatacataaactgatatgccctactacgccccgcaacgccctgctatgccctaaactgctacgccctaaactgctacaactattatttctattcatagttccattatcttttttgttactataattaccattattatgaatcataattctctatatctgtagcCATCTGTATCTAACCAGcgaccaccaagaccctggatatgtctgatgtttctgttgcaccaaatgcttgctcttgggagaattgttgggtcattgtaagttaaagagtgtggtctagacctactctatctgtaaagtgtcttgagaagagtgaactgttgttgtatatgtaaatatttacatatctaaccctataacatatacaacagaatggaaatagccaaaaactgaaaacacatcatgtcacaggacatgttatgttactgtactgcaatttatatggaaggagaatataaaccaaccatatggtccaggggtaactgcagcctcctcttcctctctgtcatcttcatcctcctgatcactctctgcctctgtccctctctctgaacctgcagcctcctcttcatccctcactgtcaattcttcctttccctcttctctttcactcatttctgcatctccttctgtggtcttctcctgctctgacctgcctggtctctccagtttactgtcttctccttcttcatttccctcctcctcttcctcctgtgcactactcaggattttcttggctggcaatatccccacttttaggcttcagctaatctctccagctactctggcctgcaacagtcaagatgtgaaaagcttgttattcttgtattacattatactgtatggccctgtagctaataagtagcctaaaaaacataacatcagacgagatttattacatgcacacatcagttatgtttagactagccttcttaatcctgttgtatttgttgttttcccagtttgacagtaaaggatgttgcctggtttaatttgtgcagccgtattgccgtgatatgtgagaggaagtggattttatagtagcctactccttaactaatcacacacacatgatcggtctcagcaagctctgtgtagtgtgttgtaacgtaacgccaccgaaacggcgaccctctgtaaacgttatgaattcaaacatgccagtttgtaatattctgtattatgctcttcttgtctttactgaaatcaaactaatcaaacagcagaatgcgCTTACAACCCACGAGGGAgcgatttgacttttggctaacagacgcgctgttgttgatactgactcgcctttagcagacattataattattacaaatttaactttagatgaaacgtgtgttttaacttcacctgggaaaacagacttcactttgagaggctcggggaggggcagctcagtcgctccagtctttgccgggatgcagggcccccacaccgcagcagactcgctgtgtgCGTGCCTGAATGTGCGAACGGCgctctgcacgtttgatgcagggacgtagctaagtatttga

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99933 lncRNA upstream 3712 22115616 ~ 22116026 (+) True G74729
TU99858 lncRNA upstream 27822 22090620 ~ 22091916 (+) False slc50a1
TU99814 lncRNA upstream 35214 22083682 ~ 22084524 (+) False slc50a1
TU99850 lncRNA upstream 83079 22036278 ~ 22036659 (+) True G74673
XR_005639855.1 lncRNA upstream 394033 21724948 ~ 21725705 (+) True LOC120562851
TU99945 lncRNA downstream 8306 22129652 ~ 22129914 (+) True G74737
TU99948 lncRNA downstream 32257 22153603 ~ 22154684 (+) False snx27b
TU99977 lncRNA downstream 62437 22183783 ~ 22184037 (+) True G74760
TU99983 lncRNA downstream 121471 22242817 ~ 22243033 (+) True G74764
TU99984 lncRNA downstream 124143 22245489 ~ 22245763 (+) True G74765
XM_039805520.1 mRNA upstream 4178 22114119 ~ 22115560 (+) True s100a10b
XM_039805518.1 mRNA upstream 6676 22110516 ~ 22113062 (+) True krtcap2
XM_039805519.1 mRNA upstream 6676 22110525 ~ 22113062 (+) False krtcap2
XM_039805517.1 mRNA upstream 9603 22107943 ~ 22110135 (+) True LOC120562069
XM_039804670.1 mRNA downstream 358 22121704 ~ 22124437 (+) True s100w
XM_039804669.1 mRNA downstream 1899 22123245 ~ 22124437 (+) False s100w
XM_039804665.1 mRNA downstream 11369 22132715 ~ 22136094 (+) False LOC120561539
XM_039804664.1 mRNA downstream 16201 22137547 ~ 22139223 (+) True LOC120561537
XM_039806904.1 mRNA downstream 18434 22139780 ~ 22153933 (+) True snx27b
TU99801 other upstream 349452 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 516508 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 715135 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 1108367 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2470227 19646975 ~ 19649511 (+) True G73779
TU99947 other downstream 11232 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 16219 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 76448 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 163958 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 175502 22296848 ~ 22306152 (+) False rusc1

Expression Profile