RNA id: XM_039804665.1


Basic Information

Item Value
RNA id XM_039804665.1
length 594
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC120561539
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22132578 ~ 22136234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAACCtctatttaaatacatttgtgtCCTCTCTTCCATACCTACACAAGTTCTCATACAAATTTGCCACCATGTCACAGCTTATGCAGGCAATGGATGTCCTCAGGGCTATCTTCGACAAGTATGCTGGAAAAGAAGGAGACAAAGACACCTTGACCAAGAAAGAACTTGCTGAACTGCTCCGCACAGAGCTTGGTGAGCCAAAATCCCAAAGCAAAGCTGAAGTGGACAAATTCTTCGGCATGCTGGATAATGACGGTGATGGTGTTATTTCTTTCGAGGAGTATGTCACTTTTGTGGCAGCCATCACTGTGATGCTTTCCTCTtagaaataagtatttgaacattGCCTTAGAACTTTGGTGTCATACTTAATGTgcactaaataaaaactaatgtgTAATCCAATTTATTACAGTCACATCTGTAAAATATGCATGCCATTATCACATGTTCTGAAAAGGAAAACTTGGTTAAATACACACAGATCATAGATGGGTTGTTGGCTGAAGGGACTTGAAAGTTGCTGACTTTGAGTGTGTttcacagatttttttaatgtcataagtaacaataaagaaaccaaaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99945 lncRNA upstream 2801 22129652 ~ 22129914 (+) True G74737
TU99938 lncRNA upstream 11369 22119738 ~ 22121346 (+) True G74732
TU99939 lncRNA upstream 11854 22119738 ~ 22120861 (+) False G74732
TU99933 lncRNA upstream 16689 22115616 ~ 22116026 (+) True G74729
TU99858 lncRNA upstream 40799 22090620 ~ 22091916 (+) False slc50a1
TU99948 lncRNA downstream 17509 22153603 ~ 22154684 (+) False snx27b
TU99977 lncRNA downstream 47689 22183783 ~ 22184037 (+) True G74760
TU99983 lncRNA downstream 106723 22242817 ~ 22243033 (+) True G74764
TU99984 lncRNA downstream 109395 22245489 ~ 22245763 (+) True G74765
TU99992 lncRNA downstream 119177 22255271 ~ 22255478 (+) True G74769
XM_039804670.1 mRNA upstream 8278 22121704 ~ 22124437 (+) True s100w
XM_039804669.1 mRNA upstream 8278 22123245 ~ 22124437 (+) False s100w
XM_039805520.1 mRNA upstream 17155 22114119 ~ 22115560 (+) True s100a10b
XM_039805518.1 mRNA upstream 19653 22110516 ~ 22113062 (+) True krtcap2
XM_039805519.1 mRNA upstream 19653 22110525 ~ 22113062 (+) False krtcap2
XM_039804664.1 mRNA downstream 1453 22137547 ~ 22139223 (+) True LOC120561537
XM_039806904.1 mRNA downstream 3686 22139780 ~ 22153933 (+) True snx27b
XM_039806903.1 mRNA downstream 4034 22140128 ~ 22153933 (+) False snx27b
XM_039805203.1 mRNA downstream 31371 22167465 ~ 22183428 (+) False adar
XM_039805204.1 mRNA downstream 32860 22168954 ~ 22183428 (+) True adar
TU99801 other upstream 362429 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 529485 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 728112 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 1121344 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2483204 19646975 ~ 19649511 (+) True G73779
TU99946 other downstream 1471 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 61700 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 149210 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 160754 22296848 ~ 22306152 (+) False rusc1
XR_005639857.1 other downstream 333884 22469978 ~ 22489944 (+) False rprd2b

Expression Profile