RNA id: XM_039806904.1


Basic Information

Item Value
RNA id XM_039806904.1
length 5218
RNA type mRNA
GC content 0.46
exon number 13
gene id snx27b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22139780 ~ 22154684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgggaaccactggctACAGTCAGACTTGTTTATTACGGTACACTGCTATTTTAGCCTGGAAATAACACTAACTGACTCACAACTTGTCTGGATACAATTATGTGGCCTACCCATAAACAGGGCCTACCCAGCATACTCACCGACACACCCTCAAAAAAGGAGTCTGAAGTGACCCACATGGAACGCATCCTGTGGCGGTCTCGCGAATCATCGGACTCTGTCGGCTTTTTCCGATGATCTCGGTCAGTTAGCTAGCCAAGCTGATTAGCCTGCTACTACAAGCTAATGTTTGCAGGATAGTTATTGTTAGCTGAATTGGAGTGGATGATACAAAGTGTATAGAAAAATGTCGGACATCGAGGGACAAGGAATTTGTTCATCGGTCCCTCCGTTGCCTCACCCTTCTTCTCGTAACGGCTCCGGTAGCAGTAACGTTACACCGGTCACCGGCGGCAGCTGCCAGACGACAACCACCGTTACTTCAGGCCCACGGCTAGTTCGAATAGTGAAGTCTGACTCGGGCTATGGTTTCAATGTTCGGGGACAAGTTAGTGAAGGCGGGCAACTACGGAGCATTAACGGAGAACTGTACGCTCCCCTGCAGCACGTTAGTGCTGTCCTACCGGGAGGTGCCGCCGACAGAGCCGGTATTTCGAAAGGGGACAGGATTCTTGAGGTTAATGGTGTAAATGTAGAGGGAGCGACCCACAAGCAGGTGGTGGACCTGATCCGGGCTGGAGAGAGGGAGCTAGTGCTGGCCGTGCTGTCCGTCCCGCCCCAGGAGGCCGACTGCCTGGATCCTGGAGACGACATTTCAGCCCAGTCCTGCTATGACTACTCCGACAAGCAGGCCGTCCCCATCTCTGTGCCAAGTTACAAACACACTGAGCTCAATCAAGAAAAGTTTGTGGTATTTAATGTGTACATGGCAGGCAGGCAGCTGTGCTCCAAGCGTTACCGTGAGTTTGTAATCCTACACCAAAACCTGAAGCGGGAGTTTGCCAACTTTACCTTCCCCAAGCTACCTGGGAAATGGCCCTTTTCCCTGTCGGAGCAGCAGCTGGATGCACGACGCAGAGGCTTGGAAGAATACCTGGAAAAAGTGTGCTCTGTACGGGTAATTGGAGAAAGTGACATCATGCAGGAGTTCCTTTCTGAATCAGATGAgAACTACAATGGCGTGTCAGATGTGGAGTTGAGAATAGCCATGCCCGACAAAACCACGCTCACCGTCAGAGTTCGCAAAAACTCTACTACAGACCAGGTCTACCAggcTGTGGTTATGAAACTAGGGATGGATAGTGTAACAGCCAGCTACTTTGCTCTGTTTGAGGTCATCAACCACACCTTTGTGCGTAAGCTTGCCCCCAACGAGTTCCCCCACAAACTGTATGTACAGAACTATACCTCAGCCATCCCAGGAACCTGCCTCACCCTGCGGAAGTGGCTCTTTACTACAGAAGAGGAGATTCTGCTCAATGACAACCAGCTTGCTGTCAACTACTTCTTTCACCAGGCTGTGGATGATGTGAAAAAAGGCTTCATTAAAGCAGAGCAAAAGTCCTACCAGCTGCAGAAGCTGGCTGAGCAGAAGAAGATGTCCATGTATCTGAGTTTGTTAAGGGGTTGTGAGGGCTACAATGAGATCATATTCCCCCATTGTTCCTGCGACTCCCGACGTAAAGGCCACGTCATCACAGCCATCAGCATTCACCACTTCAAGCTGCACGCCTGCACCGAGGAAGGGATGCTCGAGAACCAGGTGATTGCATTTGACTGGGGCGAGATGCAGAGGTGGGACACGGATGAAGAGGGCATGGCCTTTTGCTTTGAATATGCAcgaggagagaagaaaccacGATGGGTCAAGATATTTACACCCTATTTTAACTACATGCACGAGTGCTTCGAGAGAGTCTTCTGTGAGCTGAAGTGGAGGAAGGAGGTGGAAGAAGAGGCTACAGACAAGGACAATAAGAACTGCAGTAAAGATGGTATGTGTGGCAAGAATATTTTCCAGCTGCTGAGGCACAGAAGGGATGGAGGCACCTAGGAAGGGAGATTGTTACCTCTTAACTAGACACAGTCGTCACCGACTCAGCTCAGTTCGGCCCTCATCTAGCCCCAGACCCAGCAACACTCAGCTACTAACTACATGGTCATCATTTACACTCCATCAGCTACAACCTGAGAAGCTACCCCCACCCCCCGATACATGCAAACCAACTCGAATAAATCGAAGCATaacaagctacaaacacataaACCAGAACTCTTGAATCCAGCGCACCATAATCATTCATTAAGCAGAGCTCTGTCAAGTCATGGATTATTGCAAGCCTTCTTCTTATTGGCAGGGACTTGAAATGGAATGTGACTTGTACATGAGGAAGTTTTGAGCCTCGGGAGTAGTCCTACTGGGAAGAGAAAGCTGAAGTCTAAAAGGAAATACTGCTGGACTAACAAAGGGAAGAGGAAGCTGTTAGTGCTCGTAATGGGGAACACAGATAACACTGATCAGTGATACTGAAGGTTGACCACAGGAAGACAATTAGTTTCTCCATTTACGGATCAGAGCAGTAGTgtcttctttgtctttttggcCCGTTGTTAGCGTgcaagtgtgtttgtgcatgttaaCTATGTGTGCAAAATTCAAGGGGCCAACCAGAGTGAGGCCCTCAGAATGTAAGTCACAGCTGGATTGCGTCACATACATGAATTTCCATCTGTTTGCCGATCAATTTGCATTGATTAAAGAAAACTAGTAACATTGTAGCGTTGCCTCTGAGAGAAGGGAAAGCGGAGATTTTGTAGGATTGTTAGATACTTTTTGTCATTCAGAGACACCGCTGTGATGATTTGACACGAGCCGGAAACAATGTTAAACTTTAGACTACTGTTGCACTTTATCCAACAGTATTAACTCCTCCAAATGTGGGCAATGTAACTTAAGAAGAACATATTGGGCATAATACTGGAGCTAGCCTGTGCCTAGTTTACATTCATTTTTGAGTGTGATTATGTACTGCATCATCAAATGGCATGTGCCGCGTGCAAAGCCATGCAAActtatatgtatttatagtatTATGTGAACACTCCATGCAAATGTTTTGAGGGCCATTGTAGAGCAGCAGTGATGTGGAGCACACAGTATTTTTACCATGCATTACCCATAAGAGACAGCAGGGGTCCTTCTCCTCCTTTCTGCTCTCTTGCAGGCCCTGATTACTTTGTTTCTGAGAGCTCCCAGAGGATTTATAATAGGCCTGTAATTCCAAAGGCCTTTCCACTTGGCTGCACTATTTATCTCTGTAGCTGGTACTTCGCTGTACTGTTGAACCACTCATGCACTCTATATTCAGGTTAATTCGGAAGAGGATTTCTTAGGGGAAAAACGGCAGCTTGCACACTTCATCAACATATGGAGATAACTGTGTGCATTTTCAATAAAGACTCTGTAGCAACTGATCACAGAGCTGCAGTGTAATGTAATTCTGCAATGTCCCTTTAAATGAGCCCAGTTAAAGTTCTCATTCCTAGAATAATGTAATAAGGTATAACATGATTATCTGATGACGCAATAGTGACTTCAGGCTGACAAATAAACAGGTTATTCCATCATTAACTACATGCTGGCATTAAATATTAATCATTGTTCAGTGCAATATTCTGATGTTATTACCTTATTCATTAAATCTAAATAGCTTAATTGCATTATAACTCATTTAGAAGGACATTTCTGAATTTCTTACTTTATCCGAAACATAATACATGGTCAGTTGCTTCTAGGTTTTACAGAATGAGCCCTTTTATTAGTGATGGTTGATTATCATCATAATAGTAATAAGAATATTTTCCAAAATCAATATATAGCAGTATATCATAATATGGCTAATTTCTGCAAAAACACATGTAAGATAATGATGCTCAAAGCAAAGACCTGTGTTCCACTGTCATGTATTACCTGAGATGCACCAGCCCTAACTCCTATTTAGCTCGTAATGAGAATATCAACAGTATTCTTTATTATCAGGCAAGTAAAGAGTCATATACATCAGTGGCTCTTTGCTAAGAGTGCTTGTAATAATGATGGTGCTCTTCACAGAAGCCATTTTTGGGTGATTAATGAGCTTCAACAGACCTTAGTGAGTGTGTAAAAGGAGGCTTAATTGAATGTGTTGACCCTTGAATTGAGAGAATTGCAATCCTTAAAGCTGAATGCATTTCCCAAGATTCTTGTCTGTTTACTGGACCGTGTCTGAAGTGGTCGATTGTCTGATCTCCCCACCTGCGCtcagctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctcatcctgactaaagcagtggttctcaacctggggGTCGGGACCCCCAAGGGGGTTGCGAGATCATTTCTGGGGGTCGCCAGATGTTTGGagagaaaaacatgaaataccATTCTAGACTGGGGAATGGTTTTTACATTACTGTGCGAGTTTGGTACATTTCATGTGTTATATTCAGAGCTTCATTTATAAATCAGGAGGTCCTGGAACACAGAAAGGGGTCTGAAGGCGGGTCAGGGGGAGAGAAAAAGCCACAAACGCATCCCAAGTCCACAGAGCCTGATGCACATTGGACAAGGCTAGGTGCAAGCTGATAAAACTAAATTgtcattaaagctatagtgcatagtttctgtctcccccatgaggaattctaagtaatgacaacaaaactgtcggcacgtccacatgatacaagccttccttgACCACGCACCGCCGCaccacatcctcctcctcctcctccaccacgcagttgctagtagccgaggaggacacggaggattaaaaaaacatgatggactcttcagaagaggtcattatcttcaatTGAGCTTCTGGGCGGGAAAGTCACAGGTCGACCCATTCTTCTGTCATACTGAAACActgagttgtgtggagctgatagtcttgtGGCGctctgctagtaccagctctactctactctactcaGCTCGACtcggccgcggtgccccgtcTTCCATTTTCCGTTGCAGATTTAGTAACGCCTCATGCCTGAGGCAAGCGTGGCTGGTTgtcatagcgacgccgcaggaaactgccatgacctaacgcgacacacacacagaacgtcgaaggtgtgttgtttttgactctcggtatgtggctgttgc

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17936 SNX27; sorting nexin-27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99945 lncRNA upstream 9866 22129652 ~ 22129914 (+) True G74737
TU99938 lncRNA upstream 18434 22119738 ~ 22121346 (+) True G74732
TU99939 lncRNA upstream 18919 22119738 ~ 22120861 (+) False G74732
TU99933 lncRNA upstream 23754 22115616 ~ 22116026 (+) True G74729
TU99858 lncRNA upstream 47864 22090620 ~ 22091916 (+) False slc50a1
TU99977 lncRNA downstream 29850 22183783 ~ 22184037 (+) True G74760
TU99983 lncRNA downstream 88884 22242817 ~ 22243033 (+) True G74764
TU99984 lncRNA downstream 91556 22245489 ~ 22245763 (+) True G74765
TU99992 lncRNA downstream 101338 22255271 ~ 22255478 (+) True G74769
TU99986 lncRNA downstream 111006 22264939 ~ 22312515 (+) False rusc1
XM_039804664.1 mRNA upstream 557 22137547 ~ 22139223 (+) True LOC120561537
XM_039804665.1 mRNA upstream 3686 22132715 ~ 22136094 (+) False LOC120561539
XM_039804670.1 mRNA upstream 15343 22121704 ~ 22124437 (+) True s100w
XM_039804669.1 mRNA upstream 15343 22123245 ~ 22124437 (+) False s100w
XM_039805520.1 mRNA upstream 24220 22114119 ~ 22115560 (+) True s100a10b
XM_039805203.1 mRNA downstream 13532 22167465 ~ 22183428 (+) False adar
XM_039805204.1 mRNA downstream 15021 22168954 ~ 22183428 (+) True adar
XM_039805206.1 mRNA downstream 43779 22197712 ~ 22248527 (+) True kcnn3
XM_039805553.1 mRNA downstream 119159 22273092 ~ 22278899 (+) True rab13
XM_039805554.1 mRNA downstream 125623 22279556 ~ 22286820 (+) True fam189b
TU99946 other upstream 557 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 3546 22132578 ~ 22136234 (+) True LOC120561539
TU99801 other upstream 369494 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 536550 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 735177 21403127 ~ 21404603 (+) False crot
TU99979 other downstream 43861 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 131371 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 142915 22296848 ~ 22306152 (+) False rusc1
XR_005639857.1 other downstream 316045 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 316045 22469978 ~ 22488718 (+) False rprd2b

Expression Profile