RNA id: TU99983


Basic Information

Item Value
RNA id TU99983
length 217
lncRNA type intronic
GC content 0.35
exon number 1
gene id G74764
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22242817 ~ 22243033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGACCCCTGTGTTGTAATTACATAGCAACCTATagagatgtacagtacatgaaaCATAATGGAGCAGATATGGATATAAATTAATGTAACTGAATCCTGATCTTTGTCCACAGAAATCGACCTGAAGCCTACAGACATTTTGTATGAGTCTTTTATTAAATCACAACAATCTCACATTCAGATGATATGAATAAAAGAAACTGGAGCCTATGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99977 lncRNA upstream 58780 22183783 ~ 22184037 (+) True G74760
TU99948 lncRNA upstream 88133 22153603 ~ 22154684 (+) False snx27b
TU99945 lncRNA upstream 112903 22129652 ~ 22129914 (+) True G74737
TU99938 lncRNA upstream 121471 22119738 ~ 22121346 (+) True G74732
TU99939 lncRNA upstream 121956 22119738 ~ 22120861 (+) False G74732
TU99984 lncRNA downstream 2456 22245489 ~ 22245763 (+) True G74765
TU99992 lncRNA downstream 12238 22255271 ~ 22255478 (+) True G74769
TU99986 lncRNA downstream 21906 22264939 ~ 22312515 (+) False rusc1
TU100051 lncRNA downstream 380182 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 461839 22704872 ~ 22705303 (+) False LOC120562539
XM_039805203.1 mRNA upstream 59389 22167465 ~ 22183428 (+) False adar
XM_039805204.1 mRNA upstream 59389 22168954 ~ 22183428 (+) True adar
XM_039806904.1 mRNA upstream 88884 22139780 ~ 22153933 (+) True snx27b
XM_039806903.1 mRNA upstream 88884 22140128 ~ 22153933 (+) False snx27b
XM_039804664.1 mRNA upstream 103594 22137547 ~ 22139223 (+) True LOC120561537
XM_039805553.1 mRNA downstream 30059 22273092 ~ 22278899 (+) True rab13
XM_039805554.1 mRNA downstream 36523 22279556 ~ 22286820 (+) True fam189b
XM_039805333.1 mRNA downstream 46203 22289236 ~ 22295905 (+) True fdps
XM_039805334.1 mRNA downstream 53815 22296848 ~ 22312520 (+) True rusc1
XM_039805335.1 mRNA downstream 53815 22296848 ~ 22312520 (+) False rusc1
TU99979 other upstream 42999 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 103594 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 106583 22132578 ~ 22136234 (+) True LOC120561539
TU99801 other upstream 472531 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 639587 21599055 ~ 21603230 (+) True them4
TU100002 other downstream 42271 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 53815 22296848 ~ 22306152 (+) False rusc1
XR_005639857.1 other downstream 226945 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 226945 22469978 ~ 22488718 (+) False rprd2b
XR_005639804.1 other downstream 316912 22559945 ~ 22585572 (+) True celf3b

Expression Profile