RNA id: TU99984


Basic Information

Item Value
RNA id TU99984
length 275
lncRNA type intronic
GC content 0.40
exon number 1
gene id G74765
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22245489 ~ 22245763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAATTCTTTTCTTCCATGGTAGTCCTGTTAAAAGTTGTTTACTCAGAGATTTTTGTATATCCTCTGTCTAGTGTCACAATTAAGCGTCCCTTTAATGGCACTTGCTCCTTTGATCTTGAACGGTGAATGAGAACATTTAAACGAGTGCCTTCAAAAGCCAGAATGAAGAGAGCTACGATTTTTATTGTGACATGGAAAGGCCAATCTTACAGTAAAGCATGTGGACTGTGGATGTGAGGCTGACTGTGAACACAGTAACAGGGTGACTTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99983 lncRNA upstream 2456 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 61452 22183783 ~ 22184037 (+) True G74760
TU99948 lncRNA upstream 90805 22153603 ~ 22154684 (+) False snx27b
TU99945 lncRNA upstream 115575 22129652 ~ 22129914 (+) True G74737
TU99938 lncRNA upstream 124143 22119738 ~ 22121346 (+) True G74732
TU99992 lncRNA downstream 9508 22255271 ~ 22255478 (+) True G74769
TU99986 lncRNA downstream 19176 22264939 ~ 22312515 (+) False rusc1
TU100051 lncRNA downstream 377452 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 459109 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 568281 22814044 ~ 22820053 (+) False myh14
XM_039805203.1 mRNA upstream 62061 22167465 ~ 22183428 (+) False adar
XM_039805204.1 mRNA upstream 62061 22168954 ~ 22183428 (+) True adar
XM_039806904.1 mRNA upstream 91556 22139780 ~ 22153933 (+) True snx27b
XM_039806903.1 mRNA upstream 91556 22140128 ~ 22153933 (+) False snx27b
XM_039804664.1 mRNA upstream 106266 22137547 ~ 22139223 (+) True LOC120561537
XM_039805553.1 mRNA downstream 27329 22273092 ~ 22278899 (+) True rab13
XM_039805554.1 mRNA downstream 33793 22279556 ~ 22286820 (+) True fam189b
XM_039805333.1 mRNA downstream 43473 22289236 ~ 22295905 (+) True fdps
XM_039805334.1 mRNA downstream 51085 22296848 ~ 22312520 (+) True rusc1
XM_039805335.1 mRNA downstream 51085 22296848 ~ 22312520 (+) False rusc1
TU99979 other upstream 45671 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 106266 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 109255 22132578 ~ 22136234 (+) True LOC120561539
TU99801 other upstream 475203 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 642259 21599055 ~ 21603230 (+) True them4
TU100002 other downstream 39541 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 51085 22296848 ~ 22306152 (+) False rusc1
XR_005639857.1 other downstream 224215 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 224215 22469978 ~ 22488718 (+) False rprd2b
XR_005639804.1 other downstream 314182 22559945 ~ 22585572 (+) True celf3b

Expression Profile