RNA id: XR_005639675.1


Basic Information

Item Value
RNA id XR_005639675.1
length 4778
RNA type transcript
GC content 0.53
exon number 4
gene id rusc1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22264939 ~ 22312520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTCGCGAGAAGACAGATGCTGAGGCTGTCACGGTCGGAGAGAGATTCACTTTCACACGGACTGGGATGTGAGAGCCCGACGAGATGGAGACCTTCATCCATCTTTACCTAAATCTGACTGATGTTGGGAGTCAAGCCAAGATGTGACCGTCACAGTGCGTCGTAGTTTGGATCTGCCCTGCTTTTACAACACttgtttctatagcaacagaaatatcagaGTATCCTAAAAAGTCCCATTCCCACAATGCAGTCCTCTAGCTGCTCCTCTCAGCCTCCAAAGCCCCGGCGCTTTGACGTTAGCAGACGGACCAATACCGTAGCTGGACCAAAGTCTCATGGCCCTGGTTTCCAGAGGGAGGATAAAAACATGAACACGATCACCAGGTCCTCCTCCCCACGCCGTGCTACTAAAGGCCCCCCTGCACCCACCAGGACCAGGGTGGGAGTGCAGCCTCGAGTGCCAGTAAGCCAGTCCAGGTTTGGCTCACAAAAACAGGTTTCCACCATCTCCAAATCAGCTAAGCCCAAACCCAAGAGTGCTCGTGCATCGGCTGCAACCAAAATTGCACCAGCCGCAGCTCCACCTCCACTTCCCTCTGTTCTTCCTATTGACCAGAACTGCAACGAGCCGAGCCTCCCGTGTCTGTGCTGCGATGGCCGCTCCCCGCAGGACAACAACAGTATGTTCAACCataaccacaacaacaacaacaccatcTCTATCAGACAGCAACTGCAGCTACCTCCTCCTCTGGCCCCGTTGCCCCAAAGGCAGGATGGGAAGGGGGCCAAGGAGCAGCCTCAGCCTCCCTCCCAAGCACAGGCCCAGCTGGAGGCCTCCGCCCACCCTGCTGCCTGTCTGGAAAATGAAGGCAAGAATGCAGACGCAAGCACTGATCTGGACaacaagaaaaatgtaaaagtagaGGAAGAAGACGACGAGGAAGAGAGCAGTGGGGATATTGATATTGACGACGATGAAGATGAGGCTGATAATGATgacgacgatgatgatgatgatgatgatgacaccCTGGTCCCCTCGTGCTGTGActgtcccccctccctcctggAGTTCTCGCTTTCCTCCTCTACCTCCTCGTCCTCCACTTCCATCAGCTCCTGCTCTGATCTGGAGTCTGACTGTGCAGATCAATCCACCTCCATCTGCTCTTCCCACGACCAAGATAATTTGTCCGTCGCTCTGTCCCCCGAAGAGTGCTCGCTCCCACAAGCCCCTGAATGCCAGCCTCCTGCGCGTTCACCCCCATCCCTTCCTCTTAACTGCAATCCCTTCGTCTTGACATCACATTCCCCAAACCCCCCTTGCTCCCCTGATGAGGGCTACCCCTCTGCCCTGGACTCCCCTTCTCCTGACTACCTAGGAGTCAAAGGTGATTCTGAGGTCACCAAACTAGGTTTGCTTGACTTTCTAGAATCAGTAGGGGAGTTTGGGAAAATGGAGCGCTTCAGCCAGGTGATCCAAGTGGCTCGTTGGGATCTGGAGGAGGAACAACACTGGGATGTTCTGAGGGATCGGCTAGATCACCTGGATCGCTTGGAGAAGGTAAACAGGGAAGTCAAACTGTCCTACATCGCCAGACTCCATGAGAAGGGATTTGATCTTGGAGAGCTGGAAGAGCAGGATCTCTCAGATGTCATGGATGAAATGGGCAACATCGACATTCCCTGGAAGTTGTATAAAAGCGGCAGAGGAGCAATGGGAGACTCTCAGGAGTTTTCAGATGCAGGGGTTGACCTCACTGCTCCCTCAGACTGTGAGGATCCTCTTGCTCCTGATTCCCTCACCTCTTCTCCTGTTGAACCGCCACCTAGACCCCCAAAACCTCCAGCCCGTCATGCCAGTGTGAGCTCTGACCTCCACACATACATCAATATCAGCAGGGAGACCACCTCCATGGCTGTCTCCACGTCTCCTACGTTGTCTACTTTCTCCCCTAACTCCTCATCCCCCACTTTCACCACTTTTAGGTGTGAGAAACCCCTACTTCCATCTCCACCCTCCATTCCTCCTCTCCCCACCTCTAAACCGGTCCCTTACCTCACCCTTTATACGACTCCTTCTCCACCTCCATCTATTCCCACCCCAACTCCTCCCATCCCTCCCCCTCGGAAGCGTCACCTTGCCAGGAAGGAGGCGCAGCGGCTCGCTGCTCTTCAAGCCGAACAGGAAAAGACCCCcctttcccttcctcctcctaCCACACGCCCCCCACCTCTGCCTCCTCCGCCAGTTATCTCagtctcctcctcatctccccCTGCCATGCCACCTGCACTGCCTCCTCCACCCTCCTTCCATGCACTGGATGTAGAGATTAGGAAACTATTGATGCTTGCTGGATTGACCCAAGCTGAGCTCCTCAAGCTCAGCCCAGAGCTTGGTGATTGCGTTGGAGGGTTAGAGGATGAGGGAGATGGAGATTATGTTATCTCGTCCAGGTCTGGGGAGCTACAGGAGTTCAGACTAAAAGAGACAGCCGAGGAGAAGGAATGTGAGTCAGAGTTGACATCCTGTGAAGGATGGAGCAGCAGAAGCAAGCTGGATGGAGATCGAAGAGCAGATATAGCTGAAGAATGCAAAAAGAACACACAAAGAACCACCTCATTCACTGAGAtggcaagaagaaagaaaaggaacagCGGTCTGACCTCTGATCCTTACTACACCACTGGTTGTAGCGATACACATGAAACTAAAGCAAAGAATATGAGCTTTGAGTCTTTCCGCTATCCTGCCGAGGTACCGGATtcacctccccctcctcctcctcctcgcccCTTACCCCCAATCCCCCCATCTGTGCCACCCCACAAAGTCAGCACTCTCCTGGCTAACTCTGCACAGCCTGAGCGATTTGATTGGCTCATAGCATTCACACCTGAATGTGAAGCCCCACCACAGCTTCCACCCCTGGCAATGAGAAGATCTCACGTGGAAACTCAAAAGAAGGTCAGTTCGTCTAGGTCATCTCCGGGGTCAGCTCCAAAGGTCACGACTTTTAAAGAGATGCGTTACCGCAACAAGAGCACCTTCCCCACAACAAAGGTGATCACTGATCCAGACCCTGACCCAACAGTTATTACTCCAGATGcagatatactgtacaaccTGAGGTGGAGAAGGGAGATGGCAGGCGGCGACGGCAACCAATGGGAGTACACCTCTCAGGCTCAGGCCTTCTTCATGCAGCCGCCACCAGCCCTCACCTCAATGGCAGCTCTGAAGGAAATGCTCCAGAGAGCTGACGAGGAGGGTAGACAGCCGGAGCTGTGCCCATCCCAGAAGATTGGCTGCTCTCTCAGCGACAGCAGCTTGTGGACCATGGGCAGAGAGTGGGAGGGTGAAGAAGttaagaaagaggaaaaggaagggaaagaagaagagaaggtggaggtggaggtggaggtggaggagagaggaCGAGCCGATGGAGAAAGGACGTTCGAATCAAGAACCACAGTTTCCTCCCCCCCACTGTCCCTCGCCCAGTCCTCCCAACCCTACTTCCTCCACACTGCCCTCCCTTCCTATCGCCCAGGCTACTGTAACTCCCTGCCCTTTGCAGATCCCAGACCCAACCGCCATGCAGGCAGGGAGGCCACAGACaaacactgtaacacacagtgGGCCCCTGCTGCCAGCTCAGCTTGTATCCACAGAGATGATTCAAGCACTAATATAAACTCGGGCTTTAACAATGAATCCCTGGATGATTTTGGTGTAGACTCTCCTTGTGATTATGGGAATATCCTTAACACACACAAGGACTTTGCATCTGACTCTATTTGTAATTTTGACTCTCTATATTACAGTGACTCAGACACGCACATAAAGTCAGACACACCTGTTTGTGGCACCACAGAGGCTCCAGGTTGCACCACCCCATATAAGAACATTGATGTCATGATGACGTATTCAAGCAGTATCAGTGCTATGGATTCGCTGTATTCAGAAaagcgcacacactcacacacagacaacaacagcaacaaaagaGCATCCAAAGAGCTTCCTCCTCTCCCCACATATTACCTGTACCACCCTAAAAACTGCCCTCTGCACAAGGGTGCCCCTCCTCGTCTCTCCCCTATCGGAGCCCTCTCCCCTCCCCAGCGCTCCGGAGTGCCCCCTCCAGGCACAGCAGGCTTCGGCCTCAGCTCCCCGCTTTTCCCCCGCTCTCACACCTTGCCTGCCCTCGCTGCTCCCCTCTACTATCCAAACCTCTACCCTCCTATACCGCCCAGGGCACCCCCCTTACCCCCAAAACTCTACCAGGCTCCACCGCAGTCAAGCGTGGCGAGTAagatttctctctcttctctcttcctaCATCTTacactctctctttttgtctgaCATCTTGCTTGCATgcacgtctgtctgtctttcgtTCTtactctctgtttctgtctttgttctCTGCCCTGGATATAGTGGCCCtcacacttttgtcactttttcgacCCGGCGGGATTTGCAGATTTGAAAGAACTGTGTAACTGTAGCTGTTTAATGTATCAGCTGGCTGCTCCCTGCAGGTCATCTGATACATCTTATCTACACTGTCCTTTCAAATGTGCAAAGGGCCTTCAGAGAGGTGACAGCTGTTCCTGTCAGACGGTGTCTCGAGTCACTCtaatcactctctttctctttgtcttcctctgtctgtctgtctgtctgtctttgtgtcggTCTTATCTGGACGGTCTCCATGTTTTAGTTTTTGCACGCTGTTCGCAGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99992 lncRNA upstream 41370 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 51085 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 53815 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 112811 22183783 ~ 22184037 (+) True G74760
TU99948 lncRNA upstream 142164 22153603 ~ 22154684 (+) False snx27b
TU100051 lncRNA downstream 317063 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 398720 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 507892 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 612600 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 618440 22924592 ~ 22925155 (+) True G75045
XM_039805333.1 mRNA upstream 943 22289236 ~ 22295905 (+) True fdps
XM_039805554.1 mRNA upstream 10028 22279556 ~ 22286820 (+) True fam189b
XM_039805553.1 mRNA upstream 17949 22273092 ~ 22278899 (+) True rab13
XM_039805206.1 mRNA upstream 48321 22197712 ~ 22248527 (+) True kcnn3
XM_039805203.1 mRNA upstream 113420 22167465 ~ 22183428 (+) False adar
XM_039805188.1 mRNA downstream 26264 22332416 ~ 22338933 (+) True dap3
XM_039805192.1 mRNA downstream 33477 22339629 ~ 22345550 (+) True gba
XM_039805190.1 mRNA downstream 51639 22357791 ~ 22366153 (+) True polr3c
XM_039805191.1 mRNA downstream 51639 22357791 ~ 22365770 (+) False polr3c
XM_039805765.1 mRNA downstream 142367 22448519 ~ 22455722 (+) True LOC120562192
TU100002 other upstream 8554 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 97030 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 157625 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 160614 22132578 ~ 22136234 (+) True LOC120561539
TU99801 other upstream 526562 21769548 ~ 21770286 (+) True G74633
XR_005639857.1 other downstream 163826 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 163826 22469978 ~ 22488718 (+) False rprd2b
XR_005639804.1 other downstream 253793 22559945 ~ 22585572 (+) True celf3b
TU100045 other downstream 310820 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 310820 22616972 ~ 22623084 (+) False arnt

Expression Profile