RNA id: XM_039804711.1


Basic Information

Item Value
RNA id XM_039804711.1
length 1488
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120561575
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37717368 ~ 37720029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgccccctgctggatgatccacagctgctctcaggagctctgatagacgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacGAGGTCTCCTACAAGCCTGTGATCCTGGACCCAAATACTGCTTATGCAGACTTCATCCTGTCTGATGAACTGACCAGTGTGAGAGAACAAAAGAGATGGGGAGAGCAACTACAACTTCCTGGTAATCCCGAGAGGTTGGATCGTGACTACATAGgtgtcctgggctctgagggctttgactcagggactcacagctgggatgTCGAGGTTGGAGAAAGTACACACTGGGAACTGGGTGTGTTAGCACAGTCTGtccagaggaagagagacatgCAGTCTGGAATATGGAGCATAGTGTTCAGAGAAGTTGAATACGCAGCACGGTCACTACCAGATCCAGACACCGATCTCGAGCCGGACACGCCGCCCCGGAGGATCCGAGTGACTCTGGACTGGGACGGAGGAAAGCTGTCGTTCTATGATCTTtgtactaacacacacatacacaccttcacacacactttcactgagaagCTGTTTCCATTGATTGACATTAAGGGGATGGTGTTTGTTTTACCACAGAAGGTCTGTGTGACTGTAGAACAGATGAATGACTATGAAGCTTATAAGGATTATGtggataatgatgatgatggtggttaTGAAGGTTATGAGGATTATGATGGTAATgaggatggtgatgatgatgatgattatgatgattATCATTTCATTATGGGATAAagcaacaacttttttttaagataatttttggggcatttttagacctttatttgacaggacagctgaagacatgaaaggagagagaggggggaaagacacgcagcaaagggccgcaggtcggagtcaaacctgcagCCGCTGCCTTTGACGAgagaacctctatatatgggcgcccgctaaCCAGCTAACCAGGGGcccaaaaacaagttttttATAGTTAGAGTCAAAAGATTTATTAACAGCAAATAGTagaaactttcaaaaatcaGCCAAGCATGTCATGTTTTTGATTcggtctttttgtttgtttgtatgtcatCAGAATTACAGAATAACAATTGGCCCGATTTTTATATAACTTGGTGGAAGAGTGTAGCATGGACTGAGaaaaacccattacattttgatcTGAATCACGGggcagatacacaaattatttgtgCATTAACATTGCGAGCTACAGCATTTGTGTTGCATTCAAGTGGTGTAGGAATTATTGGAAAAATGACTTCCTAACTGGGAAAATtgacactgcattaacattATGAGATAAAGCATTCCTTGGCGAAGGTCTGTGCTCTCCGAGTGCTCTTCTAGCTAAACttattaaccctcctgttgtcctcgggtcaaatctgacccgttttcaaaaagtttctatatcagaaatttgggtttctttcaatcaaatttgaaaacaa

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106101 lncRNA upstream 71801 37607185 ~ 37645567 (+) True G79262
XR_005639871.1 lncRNA upstream 156582 37556675 ~ 37560786 (+) True LOC120562911
TU105725 lncRNA upstream 173823 37542905 ~ 37543545 (+) True G79011
TU105711 lncRNA upstream 184299 37531008 ~ 37533069 (+) False G79007
TU106131 lncRNA downstream 13179 37733208 ~ 37733727 (+) False G79284
TU106141 lncRNA downstream 13179 37733208 ~ 37748007 (+) False G79284
TU106143 lncRNA downstream 14433 37734462 ~ 37797202 (+) False G79284
TU106129 lncRNA downstream 17803 37737832 ~ 37786362 (+) False G79284
TU106136 lncRNA downstream 17803 37737832 ~ 37744245 (+) True G79284
XM_039806183.1 mRNA upstream 7407 37706105 ~ 37709961 (+) True LOC120562469
XM_039804927.1 mRNA upstream 131230 37583123 ~ 37586138 (+) True LOC120561715
XM_039806179.1 mRNA upstream 137513 37578597 ~ 37579855 (+) True LOC120562465
XM_039806782.1 mRNA upstream 138937 37577479 ~ 37578431 (+) True LOC120562860
XM_039804868.1 mRNA upstream 149339 37565756 ~ 37568029 (+) True LOC120561682
XM_039806380.1 mRNA downstream 14696 37734725 ~ 37742466 (+) True zgc:153896
XM_039804901.1 mRNA downstream 106860 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA downstream 106953 37826982 ~ 37845714 (+) False LOC120561705
XM_039804778.1 mRNA downstream 158887 37878916 ~ 37888006 (+) True cmtm7
XM_039806188.1 mRNA downstream 336387 38056416 ~ 38145804 (+) True nek11
TU105717 other upstream 184299 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 184299 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 284689 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 788497 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1013503 36691393 ~ 36703865 (+) True LOC120562457
TU106195 other downstream 158935 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 336387 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 367947 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 450025 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 450025 38170054 ~ 38320429 (+) False G79351

Expression Profile