RNA id: XM_039804714.1


Basic Information

Item Value
RNA id XM_039804714.1
length 3733
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120561578
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12641939 ~ 12649833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAACGGAGCATCATGCTTATCGTATCCACAACTTTCCTCCTGAGAGATCACATCCAATCCCCAAGTCTCACATCCATCTCTAAATTCTGTGTTTTGCGTTGATGGACAAGATGATCGCAATGCTCGTGCTTCTGATCCTCAAACCAGGAAGTGTGAGTGCTGGTTGGCCAGTGACTTTTGAAAACCCAAATCCATGTGCTTTAAAGGGATCATCGGTGCATCTCAGGTGCTCATACAACTACACAGATGGGGAAACTGTTAAAAGGACTGCATGGTACAAAGGGGAATTAATAGATGGCACCTGGAAACGCGTTGAGCTCTCAGACCTTCCTTCATATCAAAATCGTTTTAAATATCTTGGCGACCAGCAGCACGACTGTGGCCTGGCAATTGATGACCTGCAGGATAATGACACTGGACATTACTACTTCCGGTTTGATACACAGAGGTTTGGACAGCGGAGCAAAGaatctgtgtatctgtctgtcacAGAGCTGAGTGCCAGAGTGTACCCTGACAGGGTGAGAGCAGGAAGCACTGTGAATCTTGAATGTGGAACATCCTGCCAACTTCCCAACACAGTTTGGTTTAAAGATGGGCGTCCAGTAGCCAAACCAGTGTTCCAGGCTCAAGCAGAGGATTCTGGGAATTATTTATGTGCTGTCGAAGGACAGGAGTCAGTGCTATCTGACTCTGTGGCTCTGGATGTTCAGTATCCCCCGTTGAATGTATCTGTTGAGATAAGTTATGCTGGTCACCTGACAGAGGGCAGCAGTGTGAATCTGAGCTGCAGCAGTGCTGCTAACCCTGCAGCAGACAACTACACCTGGTACTGGGCTTCTGTTTCCAGTTCCAGCTCCCTGCTCCAGGTGGGCTCAGGACAGGTGCTGTCTCTCCCCTCTGTGGAGGCATCCCACTCTGGACTCTACCTCTGCCAGGCCAGGAACCCACTGGGGCAAAACAGCTCAACTGAGGTGCTGCTGACAGCGGGTGATGCAGACATTAACCGTGTCATCATCTTTGTTGGTACTGGAGTCTGTATTGGCCTGTTGCTTCTACTGTTTATTATCTGGGCATGGAGGCAGAGATGTAGTTCTGCTGTGGATAAAGAGGAAAACAGCCCTGATTATGAAAACATCAGCATTGCCTAAATGGgtgaaaagcaaacaaacaggTTGACAGAGAAGGACATGTCTGTTGTCTCCCTCCGCCTGAGCCTGATGACATTTCATTAAACCAGATACATGACCTGCACAAGAATGTCTGTGCTTTGTACGCTGCCTGGAGCTCAACATAGTTGCTGAGCAGCAAGTTTCCCAACATGAAAATGCAGCAACACCTCTCATTCCCTCCTGACTCCTGTCTGTGTAAACGTCAAGTACTTCTCATGAGAAGACAGAAGGGAATTGGAACGTTACCCAACCTTGCAACAATACTTTTATGAGAAAATAGCTTAATTTAGTAACTTAAGCTATGAAAGTACAGTAATGTAACATTTTTCAGTGGTTCACTGCTGGTAAAACAGACTGTATCCAGAATCAGTGGTCGAACCAGGATATGCTGCCATCTTGAGTTCAAAATACTTATGCAAATGATGTTCTTGTAAATGATTTGTTAGCTTCAGTCCACCAAATTAGAAATattatgtgtgttttattgttatttcagTATAAACACAGCTGTGAAGTCGCGTAGAATGGTCgacatttaacagtcacaaactccaccagcggtGAGCagtagttggatacaagcaccccatttctgcaccagtccgtgttaacacagcccacctccacgagtcttacccggcgacagagcagcatCTCTATCTGCTCTGAAGGCTAGCAGTAGTGATGGCGAACTGAAGCTTTCTGAACCAGTGAAGCTTTCAATCCAATTGTATCGAAAAAAAGGTTCAGTACTCGAAACTTCAGAACTCTATGAGGACATCTGCTGTTGAAAGTTAAGGATAACATTGTGTCACAAACTGTTTCACAGTTATTAGCCATGAATGTCTTTGAGTTGaagatgaatacattttgagtatgaattcatggataaataaataatgacataaataACTAAGCCTATGTGGGACCttgcataaataaaaatgtaattgccttctccacaaaaaaaaagaacaataaagttaggattttggttgtgaactgtcttgtgtttgtaaacaaatacatCAGTTTGGGAGGGAAATGAATGAAGAACACATTGCACATTGCCCACACATTTGTGTGATTATATTGAGTACGTAGCATAGAGCAACATTGTCTCCTCAGCCAAATAGGTGAGATATGCAGTGCAGAAGGCGCTATAAACTCTCTTTTATAAACTCTCTACTCAGTATAAATTTAGGCTACTTGCAATAAACTTGCTATAAACTAGGCTACTCGGTATGAACTTTCTACTGGCTATACACTTTCTACTCGCTATAATATTCACTATAATAATCTCTCTATTCACTAACTCTCCTGACTCTGTTGACTCCCTACTGCAATAACCCACAAAGGCGTGCCCCGTGTCGCGATGCTCGCGCAGCTTTTGAATTCAACTTTGAAGCAGtcacgtgggtgtgtgtgaaacgAAGCTTCGGACGTCACTGGTCACGTGATTATCCCAAAACGAATCAAGCGCCGATACAAAGCTTAATTCCAAATTGGTTCATGTTTTCGATACATGCCTCGAAGCAGGGGGTTCACGGCTAACATCACtagctagcaggcctggtagctgaactcgcgttgggagtttcgttgaagttggatgtagtctaGTTTGTTGtataatgagcggacacttgcaagcaggatggatgggacagatggccggctagcattagctttccacctagctcgaACTCCTGCACGCCGCTTTCGAGGTCCCTTTCCCCGGCTGGCGGCATGGAGCGACActgcaggctgaggtgctggtctccgtagcaggcgAAACTTGCGTAGTGTGTCGattattccgtctgtaataaagtgtcctgcatattctccaatctgtaccaatgtatcccggtggtacacatgtgcggtagtttgaatgcacataattgttgtaaaagtttgctGTTGAAAagagagagcctgtttagcgtagctccaagatggctgacactcgaccatggatgtattaaggcACTTGACTCGCATCGGTAGCGACAGTCCCAcccctatgggcgggttgaaaacatgcggaactagctggctgtagtccatagACTCTGGGCAAAAATCCCTCCAATGACGCTAAATGaagatttttgcgtcatcagaggctttttttccagacccacaatacagagagggagggaagcatggtAATTTGAAAATACTAccgtgtttctactgatacaaagctaaatgctaattGGTGAAGTATCCTTTTATCATATTTAGTGTTTGAAATTGTAACAGAAATAATCACAGCATAGCATTTATGGGGTCAatgcattttaaagtttgtttcatCTGTAAACTGTTCAACATATGCCACAGATGGCAGGACTTTGGTTAATATGGTAGTAATCCGTAATCGCTATTCAATAATCTTTTTGTGTACCTTCTGACTCCTGTAAAGACATTTCACACCTGCATGaaaaataacaagcatttcctgGCTGCTGTAATCACtgtataaatcatgtttttatgtcaaaGTATAAGTTATTAACATGTTTTCTTATACAATAAACTTAAACTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96245 lncRNA upstream 2150 12639314 ~ 12639789 (+) True G72036
TU96198 lncRNA upstream 8166 12502511 ~ 12633773 (+) True G71995
TU96237 lncRNA upstream 45280 12594584 ~ 12596659 (+) True G72028
TU96221 lncRNA upstream 101388 12537310 ~ 12540551 (+) True G72018
TU96209 lncRNA upstream 121934 12518663 ~ 12520005 (+) True G72006
TU96322 lncRNA downstream 68728 12718561 ~ 12729153 (+) False LOC120563165
XR_005639745.1 lncRNA downstream 111220 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 128397 12778230 ~ 12778442 (+) True G72117
TU96356 lncRNA downstream 166304 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 176818 12826651 ~ 12883769 (+) True G72134
XM_039804999.1 mRNA upstream 74275 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA upstream 77141 12555942 ~ 12564798 (+) True sdha
XM_039804997.1 mRNA upstream 91981 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804996.1 mRNA upstream 95466 12544496 ~ 12546473 (+) True mrpl32
XM_039805266.1 mRNA upstream 157027 12478898 ~ 12484912 (+) True LOC120561925
XM_039804718.1 mRNA downstream 9683 12659516 ~ 12676990 (+) True hpn
XM_039804720.1 mRNA downstream 9683 12659516 ~ 12676990 (+) False hpn
XM_039804717.1 mRNA downstream 9684 12659517 ~ 12676990 (+) False hpn
XM_039804719.1 mRNA downstream 9684 12659517 ~ 12676990 (+) False hpn
XM_039807305.1 mRNA downstream 61769 12711602 ~ 12729226 (+) True LOC120563165
TU96107 other upstream 932430 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1025697 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1025697 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1820439 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1820522 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 110984 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 475101 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 818394 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1483778 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1526016 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile