RNA id: XM_039804720.1


Basic Information

Item Value
RNA id XM_039804720.1
length 4382
RNA type mRNA
GC content 0.43
exon number 14
gene id hpn
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12659516 ~ 12676990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTGTAGGACAGTGTGCTCACCTGCAGCAGGTctgcagggacagagagagCTCGCGTGCCCTGTTTGTCCACTCAGAAACCTAAGTTGACGTCACTATTGCCCCTCTTGTCTGCGCAGCTGACCGCTCACAGGACGACCACACAAACCGATGAAGTTGGGATAAACTTTCACTAACTTTGTCTCAATTAGCCCAGTCTTCCAaatgtttctctcttttctatTAGAAGCAGGCGTCGGTGGTTTTGGTTGATAGAAACGGTCGCTGAAAACGTTGCTaccttttttccccttctttcgTTGGGCGGACTTAAAAAAGATAATATTTGTGATTAACGAAGGCCAGAGCTCCACCTTCTACAAGAAAACGCAGGACCCTCAATATTATATTACCAGGCAAACGTGACGTGGCCCACCTGCCCTAAGGAGTcaaggagagaaggaaggaaagatCGTTGTCTATTGTTGCCCTCTGCTTCCTACTGTATATAGATGTATACTGAGAAAGTTGTGACGGAGGGGAAGATGGtgaACAGGGGAATCTCTCTGACCTGTTTGTTGACCCCCTGCCGtgtgattggtgtgtgtgtgactctgatGACCCTGGGAGCCATTGGAGCAGCCGTCTGGGCCGTAGTCACGTATTGCACAATGGAGGAAGACACAGGACTGTATGATGTCCAGGTAAATACTGCTGACCAACGTCTCAGAGTCTTTGACTCCGCCCAGAGGAGGTGGCGTCAGGTGTGTTCCTCCTCAGCCAATGAGCTGCTAGCTAGCATCAGCTGTGAAGAAGTGGGCTTTATAAGtgTGGTGAATTACTCAGTCACATCGGTGCCAGAGGCCAGTGGAGATGGTGGGGAGTTCTTCTGTGTCAGACAGCAAGAGCTCAGCTATGGCAAGAAAATCAAAGACTCATTGTTCCCATGTGACTGTGAGAGCAGGGAGGTTCTCACACTGTTGTGTCAAGACTGTGGCAGACGTAGTTTTGCAGCAGACCGTATAGTTGGTGGTGTGGATGCCAGGCAGGGCAGTTGGCCTTGGCAGGTCAGATTGGAGTATGATGGAGTTCATCAGTGTGGAGGAACCATCATCTCAAACCGCTGGATTGTCTCAGCTGCTCACTGCTTTCGAGAGCGGTATCGCTTCGTCAATCGCTGGCGTGTGCAGCTGGGCTCCATCTATAGCAAACCAGTCAACGCCAACGTGGCTGAGGTGAACACCATTGTTTACCACAGCAGCTACCTGCCCTTTGTAGATGCTAGCATTGATGACAACAGCAGGGACATCGCTGTTCTGGCCCTCACCCATCCCCTCACTTTCAACGaatATATCCAGCCTATTTGCCTGCCAGCATATGGTCAAAGACTGATAGACGGACAGATGGGAATAGTAACAGGCTGGGGAAATGTAGATTACTATGGTATTCAAGCAGATATTCTCCAGGAAGCCCATGTCCCCATCATTAGTGACACTGTCTGTAACTCTCCTGATTACTATGACAACCAGATTACCACCAGTATGTTCTGTGCTGGTTATGAGAAAGGAGGCACTGATGCCTGCCAGGGAGACAGCGGTGGTCCTTTCGTGGCAGAAGACTGCCTGTCTAAGACCAGGCGGTATCGGCTGCTGGGGGTGGTGAGCTGGGGAATAGGCTGTGCCATGGCCAAGAAACCAGGCGTCTACACCAGAGTGTCCCGATTTCTGCCCTGGATATCTACGGCCATGAGGAACTATGACCACTCACCAGGGCTTCACAAAATGGCCCGGACATGAGATTCCTGCTCCCATGTTtccactttttcttctcttgggATGACAATATTAAAAGACCTCAAAGATGTCAACAGGGACTTTTGGACTGGGGGATGCAAGGCTGCCACGTTTCCCTCATATCACGGTTCTGGATTTTCCTTTTCAcctaaaactttttttattgagATTATTTTTATTGAGATTCCTGAACCTTCCCACATTGTTAAATGCCCACCAAGACCATACTCCTTGATAGATACCCTGTATATTTGCAGAGATACACAGAGCTCTTTAAAGGAGCTGTACTCAATATTCAGCACATTAACatagcagcaaacaaatattttgtATGTAAAGATATGGTGGAGTAATGGCATCCTATGCAGAAAATCTGTATGTATTGTAATCcaagcttctctgttctttgttttgatagctGGTTCAGCAGCATGTACATGTTTGTGCGTGCCTTGTGCGTTGGTATCAGACGTCAAGGGCTGTGACAACCGCTGGTGTTGAGCAGTCCGTGAGCCCACTTTTCAGTATctcgagtacagcccctttaagaaACATGAAGTTTTACAGATCAGCAAAAAGTTATTGAAGTTGACTGTTATTATGAAGTTAAATATTAATAAGAGGGCATAAGTGAAACAATATTAGAATCAGTATACTGGATTTAAGGTACCAGCTTTGCAAAATATAATGAGATTATTTTTCTGAGATTACTTTTTTCCCCGCTCTTGTACGTTTTAGCTCTATACTGTCACCAGAAGTAAGAAATAACCACTATAACTTGTGAGTTAAACAGCAATAAATTGAATCGAGACTTGTAAATGCTCAGGTttgccttaaaggtcccatattgtaaaaagtgagatttccatgtcttttttttattatagagcaggtcgaggtgctataTGAATACTGTGAAAGgatcaaaacgctcaatccacagggaaatgcacacagcccttATTCAGAAACGGTGCCTTTAAACAAGTCGTCAGGACTTTATTACAGTTATGATgacacaactatactatatacatgTAGACAGTGCCTCTACAGTGcagttacagtcattccctgaCTGCAATGATGGTGCAGGGACACTTAGAGCGCAGATAAGGAAGACtcagaaacgctgaccaatcggagcagactgggcttttccaGCAGGGGATCTTAAAGAGACTGGggctaaaacggagcgttttAGACACAGGATGAATACAGGTatcttcagacagacagtatgaggaaaataatgtgtttgtgaacattaaagcatgtaaacaggttctaatagaaacacaaaatacaagtatcaaCCTGAAAAagagcatgatatgggacctttaagaattcTAGATGTAATTACAAGGATTCATACAATAAGAATTAAATTCCTTATGTAGAGGTTTTATCTTGTTCCAACGAGAGTCCCTTTCTTCAGTGCCAGACTTCCTGCTGCCAGCGTGCATAGCAACCCACAGTGAGTGCAGACTGCACTGTTGATTTGTAATAAAGATCATAAAGATCTCGTGCAAATTCAACTCCTAGTACTTTTTACAttgtgcaacacacacacacgcacacacacatgcacacacgcacgcgttcacacacacacacacacacacacacacacacacacactaataaaatGTCAATAATTTATGAGTAATGCTAATGGATAACTACAACGTTTCCTGGCGagctttattttgtaaaatcaCAGCGCACATCAAACTTTTCAATctcatttttataattaaaCTCTTTCTTGTGTGACACATGTTCATGTCTTTTATATGCAATAACCTGACTTTTGTATGAAAAATTATTGTCTTTATCAAGTTCCCACACGAACTGGTAAAGATGATGCTTATATTCGATCAGCAATATCAGTATTTTGTTGATGTCTTGTAAATATTAGTCATTATCTTGTTTATGTAGATGTTTAGATGTCTTTATGATCCACAGATCTTAGAGCCAAGAGTGCAATAACAGCTGAAATCATGTTCTCAGAAAATATTTCTTTTACTGCACCGCATATTGATTACCATCTTTTAAATGCTAATGATGTCTCATCATATTGACCGGCAGGAGTGTGTATAATCAACCATGACCAATGTACAGTATAGTATTATATACTACAACTCCCCCTCTGCTCCACACTGGATTAAAGCTCTCAAGACGTTACTGGACTGTGAAAAGGAAGTGTTCTTTGAGGTATACGGATAGGCACAAAAATGACAGCACTCTGCTGATGTCATgagcaaaaacaaaatttaCAAGAGTATTTACCATAGAGatacattataaaaaatataatgtgGAGTTCTACTACTGTAGTAGTACAATCTGTATACTGCACCTGGCCTAAAGAAAGTGTTGTATGTGAACACAAATGCAGAATAGATTTGAACATTGAACCCTTTCTGGCACTGATTTCTAGCTCTTGCCTAAACAGAATGTGATGTGAAGTCGACTCACCACCCGTTCCATAAATGCATGTACATTTATGGCAATTATTATGTGTGCAAGAGAAATACATATTGTTATATGTAAATTGATGCATTGAGTATTgtattgaaataaaaacaacttgCCCATAGA

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0070008 serine-type exopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96245 lncRNA upstream 19727 12639314 ~ 12639789 (+) True G72036
TU96198 lncRNA upstream 25743 12502511 ~ 12633773 (+) True G71995
TU96322 lncRNA downstream 41571 12718561 ~ 12729153 (+) False LOC120563165
XR_005639745.1 lncRNA downstream 84063 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 101240 12778230 ~ 12778442 (+) True G72117
TU96356 lncRNA downstream 139147 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 149661 12826651 ~ 12883769 (+) True G72134
XM_039804714.1 mRNA upstream 9683 12641939 ~ 12649833 (+) True LOC120561578
XM_039804999.1 mRNA upstream 91852 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA upstream 94718 12555942 ~ 12564798 (+) True sdha
XM_039804997.1 mRNA upstream 109558 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804996.1 mRNA upstream 113043 12544496 ~ 12546473 (+) True mrpl32
XM_039807305.1 mRNA downstream 34612 12711602 ~ 12729226 (+) True LOC120563165
XM_039807308.1 mRNA downstream 34612 12711602 ~ 12729226 (+) False LOC120563165
XM_039807311.1 mRNA downstream 34612 12711602 ~ 12729226 (+) False LOC120563165
XM_039807312.1 mRNA downstream 34612 12711602 ~ 12729226 (+) False LOC120563165
XM_039807306.1 mRNA downstream 37928 12714918 ~ 12729226 (+) False LOC120563165
TU96107 other upstream 950007 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1043274 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1043274 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1838016 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1838099 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 83827 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 447944 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 791237 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1456621 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1498859 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile