RNA id: XM_039804753.1


Basic Information

Item Value
RNA id XM_039804753.1
length 975
RNA type mRNA
GC content 0.41
exon number 5
gene id stmn1b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17741886 ~ 17747026 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGAATGCAAAGAGCTCTGGtgacggttggggttaggaggTTTTTGCGCGAAGGTGCAGATGTTGGCGGTCTGAACAGAGAAGAAGTCAAGAAGAAGGTCTGCTCTTCAACCTGAGAGGCACTAGACGTTGTATCAAAGAAGCAAGAATTTCTGCTGAAATGGAAATCTGTGGAGACATCCAAGTGAAGGAGCTGAACAAGCGTACTTCTGGTCAAGCATTTGAGGTCATCCTGAGCCCCTCAACCCCAGATGCCAAGAGTGAATTTCCGTTAACCCCGCTCAAGAAAAAGGAAACATCACTGGATGAGATTAAAAGGAAACTGGAAGCGGCAGAAGAGAGACGCAAgAGCTACGAGGCTGAGGTGCTGAAACACTTGGCTGAGAAACGAGAGCACGAGAAGGAAGTCATCCAGAAGGCCATAGAAGAAGAATGCAACTTTAGCAAGCTGGCGAAAGAGAAACTCAATCAAAAGATGGAGGCAAACAAAGAGAACCGCACTGCAAGGATGGCAGCTCTCAATGAGAAATTCAAGGAGAAGGACAAGAAGCttgaggaagtgaggaagaacAAGGAGACAATGAAAGAAGTGGAGAATTAATTTGTTCATGATCTGGAAAGATaagctttattttttaaactggcATTTTCATGGTATTGTTTGTTGTGTTCGTTCTGATTGtgctgttaaataaaaagttggTTACACAATGTTAGATTGGGTGTGGATATAGTACAGTCTGATTTCTCTTCGCTTGTCTTGTAGATTTCTTATCGGCAGCTGATTAGACTAGTTTTTTGGTACAAGCTATATTTTTTCATTAAGAGGCATTCTGTTGTAATAAATTGGTCCTTATACTTCATACTGTTAAAATGCATCATACAATACTGTTCTGTACTGTTGGTAACGTTGCATGTGTGAATATACTGTACGATACCAAGTTTCAACCATTAAAGTCTATATTCACAATTTAA

Function

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 236965 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 278859 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 338259 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 675975 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 749897 16991716 ~ 16991989 (+) True G72879
TU97801 lncRNA downstream 176924 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 367689 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 377968 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 377968 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 378054 18125080 ~ 18126954 (+) False G73230
XM_039804751.1 mRNA upstream 506 17739832 ~ 17741380 (+) True LOC120561605
XM_039804793.1 mRNA upstream 118197 17617748 ~ 17623689 (+) True oprd1b
XM_039807047.1 mRNA upstream 148859 17584023 ~ 17593027 (+) True tcea3
XM_039804754.1 mRNA downstream 3904 17750930 ~ 17755055 (+) True paqr7b
XM_039806002.1 mRNA downstream 345277 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA downstream 345278 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039806700.1 mRNA downstream 423803 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 563046 18310072 ~ 18311498 (+) True LOC120562798
TU97725 other upstream 94700 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 281559 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 289318 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 373111 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1669685 16018359 ~ 16072201 (+) True G72750
TU97779 other downstream 3930 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 652030 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 652030 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 668072 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 885376 18632402 ~ 18637307 (+) True LOC120562796

Expression Profile