RNA id: XM_039804766.1


Basic Information

Item Value
RNA id XM_039804766.1
length 1952
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120561617
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14611912 ~ 14619881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTTACACCTTGTCTTCCGTGGTGTGCAAACCAATTGTCATTTCTCGTACATAATGAGCTTGGGTGCATTGCTGATAATTGATTTGATCTGGCCGTATACATCAGCATCTTGTGATCCAGAAGAAATACAACGATCAGCTATCTTCTTATCAGCACTGGCAGgaaGCTCACCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAGTGAGAATCCAAAAGACTTACCAAGCTCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGTTATGGAGCCAATTTTATTCCCACCCTCTATGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTAGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGCGGTCCTTGGTATTTATAATATAGTTTTTTACAGTGGGATCTTTTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAGGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATTATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATTCCACAGCAACTTCGAATGACAACACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGTTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGCCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCTTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGACGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGGTGGGTTgttatttctgtctgtgtggtcATCTCCACAATGAGGGAATTTCTTGTGAAGTCAAATAGTCAAGTTGAGAAACAATTCTTGCTAATTCTGACTTCTTATGGGCCATTTTAGGACTTCAGTTCATTTTTCACTCAGTTGGCTTTAGGTTGATTTTGAGTTTTGGAAATGTATGAATATGACAAAATACATGTGACAATGTATCTTAAATCTTATGGTATGATTATGTAATCGAGTAATACAAACACAGTGTACCCgtgtataaaagtaaaaggtaTATATCTTTATACTTTTATAAGTTCTATAGACTACATAAGAATGTACAATggaaatgtactgtaaatatggTTCCGGATATGCAAGATCTTTAAAAGAGTTGATGAAGCAGATTGTATCTGCAATTTTAAAGGTCAAAAATAGTCCTGAAATAAATGTCTTATCTTTTTTGAGAGACAAACTCAGATGCTGACCAGTTCCTTGCAGTTCAAACACCAGTAAGAGAATTGAAACAAATAGCTAAACATGGCTAAtagcaaaaagaagaaaaaaaagcttttgcaAGTATTGCAAG

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96909 lncRNA upstream 7274 14603984 ~ 14604638 (+) True G72551
TU96863 lncRNA upstream 94015 14514667 ~ 14517897 (+) True G72520
TU96813 lncRNA upstream 241821 14368266 ~ 14370091 (+) False LOC120562174
TU96799 lncRNA upstream 448168 14163536 ~ 14163744 (+) True G72466
XR_005639660.1 lncRNA upstream 524116 14086603 ~ 14087796 (+) True LOC120561831
TU96919 lncRNA downstream 13199 14633080 ~ 14633375 (+) True G72559
TU96920 lncRNA downstream 14296 14634177 ~ 14635023 (+) True G72560
TU96921 lncRNA downstream 17989 14637870 ~ 14640768 (+) True G72561
TU96925 lncRNA downstream 24495 14644376 ~ 14645788 (+) True LOC120562067
XR_005639683.1 lncRNA downstream 24960 14644841 ~ 14645241 (+) False LOC120562067
XM_039805273.1 mRNA upstream 4008 14603952 ~ 14607904 (+) True LOC120561930
XM_039804905.1 mRNA upstream 8229 14600889 ~ 14603683 (+) True LOC120561707
XM_039804906.1 mRNA upstream 8229 14600889 ~ 14603683 (+) False LOC120561707
XM_039804909.1 mRNA upstream 17928 14590243 ~ 14593984 (+) False si:cabz01093077.1
XM_039804932.1 mRNA downstream 6597 14626478 ~ 14632721 (+) True LOC120561718
XM_039804933.1 mRNA downstream 6597 14626478 ~ 14632721 (+) False LOC120561718
XM_039805511.1 mRNA downstream 83542 14703423 ~ 14704824 (+) True LOC120562066
XM_039806393.1 mRNA downstream 142489 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA downstream 142623 14762504 ~ 14872839 (+) False dnah5
TU96848 other upstream 185732 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 435285 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 467616 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 1141462 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1486015 13124934 ~ 13125897 (+) True G72204
TU96917 other downstream 6597 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 406701 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 933583 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1398478 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2748822 17368703 ~ 17368775 (+) True trnar-acg_16

Expression Profile