RNA id: XM_039804782.1


Basic Information

Item Value
RNA id XM_039804782.1
length 1460
RNA type mRNA
GC content 0.54
exon number 6
gene id efna3b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21975192 ~ 22033267 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTGGTAGCTGGGGGATTCAAAGCTTTCTACTTTTACACTAGCAGAGGAGGTCGAATAGTTGACAAAAAACTTCAAGTCGCAGTGATGCCTGATGTGCTGCGACTCGGCCACAATATTGGAGGAATGCGCTTTGGTCGCTCGCAGTGGGTGGAGTTAGAAAGTGAACGAGCGCTGCCTAccaaacagagagaggagaaggaggagagagagaaaaaggaaagagacgGGTGGGCAGGCTGTTCACCGTAAACGATGGTTGTCGGATAGAGTCTTGAAGACCTAATGAAACTGGCTGGTTGAATTGTTTGCAGCGATTATAGAGCTCCGTAGCCCGGCGTGCTCTACAGCTCTCGGATCCCTGGATGGAAAAACTGCAGCAGCACGCAGATACagagtttaaaaaagaagaataagAGGACTTGCTTAAAACCTATATATTATTTTACTAGCGTTTTTTTCACCCTTCATTTTACCTACCAGTAAGCCTTTTTCACGTCAGCAGCAACTCTTTCGCAGCGGACAGGACCGTTTCATGTTCGGAGCAAGACCAGCCTCCCACTTGGACCCAATACCGGCCTCCCGCACTCTTCTGGCGGGCTCAGAAGCAGCAGTTCCCGGCATTTGCTGGGATGTTTGAGTCGCGTTGTTTGGTGGGGTGAAGGGACCGAGAGAGTGGCCGGAGAGACCAAAGGGACGGAGGCCGAGAGAGGAGCCGAGAGCATGGCTCTGGTAGTGCTGTCTCTCTGGGTGCTAACGAGTCTCACCTGGGCGGACGTGGTCCCGGTGTCAGCCAACAGGCATTCCGTTTACTGGAACAGCTCCAACATACATCTGCGTAGGGAGGGCTACACAATGCAGGTGAACGTCAACGACTACCTGGACATCTACTGCCCTCATTACAATGACAGCCAGCGCATGGTGGGCACCGGCGAGCAGTACGTCCTCTACATGGTCAGTTACCGCGGTTACAGGAACTGCGACCCCCAGCTGGGCTTCAAGAGGTGGGAGTGTAACCGACCCCACGCCCCCCACGCGCCCATCAAGTTCTCTGAGAAGTTCCAGCGCTACAGCGCCTTCTCGCTGGGCTACGAGTTCCACGTTGGACAGGAGTACTACTACATCTcCACGCCCACCCACCATCACGGCCGCAGCTGTCTGAGACTACGAGTATACGTCTGCTGCTCCACGGcctctGACGTGGATGATGACCCAGAGCCTACAGAACCAGACTACACGCTTAGACCAGGCCTAAAAATTGACGATATTGATGAATTTAACCCTTTTGTTCCCAAGCTGGAGAAGAGCGTTAGCGGAAGCAGCCCAACCAGGGATCGCCTTCTCCTCACCGTGACGATGCTCCTTCTGGCCGCTCTCTTCATCTCCTAGCAACGGCCATCCCATCAGCGTCACCATGCCAACTAGCCTTGGGAGGGCGTACAGTATCAGTGGGTGGGAGAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639855.1 lncRNA upstream 249487 21724948 ~ 21725705 (+) True LOC120562851
TU99494 lncRNA upstream 639499 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 682812 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 684878 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 685817 21289171 ~ 21289375 (+) True G74286
TU99850 lncRNA downstream 3011 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 50415 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 57353 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 82349 22115616 ~ 22116026 (+) True G74729
TU99938 lncRNA downstream 86471 22119738 ~ 22121346 (+) True G74732
XM_039807229.1 mRNA upstream 74540 21890529 ~ 21900652 (+) True flad1
XM_039807230.1 mRNA upstream 74540 21891078 ~ 21900652 (+) False flad1
XM_039807314.1 mRNA upstream 139841 21818053 ~ 21835351 (+) True chrnb2
XM_039807315.1 mRNA upstream 139841 21826626 ~ 21835351 (+) False chrnb2
XM_039805303.1 mRNA upstream 156970 21805074 ~ 21818222 (+) True she
XM_039806800.1 mRNA downstream 35739 22069006 ~ 22080302 (+) True efna1b
XM_039805304.1 mRNA downstream 50402 22083669 ~ 22091963 (+) True slc50a1
XM_039805517.1 mRNA downstream 74676 22107943 ~ 22110135 (+) True LOC120562069
XM_039805516.1 mRNA downstream 74676 22107943 ~ 22110135 (+) False LOC120562069
XM_039805518.1 mRNA downstream 77249 22110516 ~ 22113062 (+) True krtcap2
TU99801 other upstream 204906 21769548 ~ 21770286 (+) True G74633
TU99582 other upstream 371962 21599055 ~ 21603230 (+) True them4
TU99513 other upstream 570589 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 963821 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 2325681 19646975 ~ 19649511 (+) True G73779
TU99947 other downstream 99311 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 104298 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 164527 22197794 ~ 22199818 (+) False kcnn3
TU100002 other downstream 252037 22285304 ~ 22288294 (+) False fam189b
XR_005639675.1 other downstream 263581 22296848 ~ 22306152 (+) False rusc1

Expression Profile