RNA id: XM_039804793.1


Basic Information

Item Value
RNA id XM_039804793.1
length 4362
RNA type mRNA
GC content 0.41
exon number 3
gene id oprd1b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17617748 ~ 17623689 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGTGCGCTCCTGTACCTGCTCTCCATGCGCTACAATCTCACCTGAATTGTTTTAGAAATGGATTTTCCTCCCTACTACGCTTTCGGTGATTTTAACGACTCGGTCTCCATAACTCCTTTCAATGTAACGTTTACCGAGGATCCGCTGCGCAATTTGACCAACAACGCTACAGCCAGGAACACTACAAGTCTCATCATCGCTGTCTGTATCACAGCTCTCTACTCTCTCATCTGTGTGGGGGGACTGCTTGGAAACGTGCTTGTAATGTACGGGGTGGTCAGGTACACCAAGATGAAGACCGCCACCAACATCTACATCTTCAACCTGGCTCTCGCTGACGCTCTTGCCACCAGCACCCTCCCCTTCCAGAGCGCCAAGTACCTGATGAGGACATGGCCCTTTGGGGAGGTGTTGTGTAAAGTGGTCATCGCCATCGACTACTACAACATGTTCACCAGCATCTTTACGCTCACCATGATGAGCGTGGACCGCTACATCGCCGTTTGTCATCCAGTGAGGGCCCTGGACTTCCGCACGCCTGCCAAAGCCAAACTCATCAACATCTGCATCTGGATCCTCTCCTCAGCCATCGGAGTCCCTGTGATGATCATGGCTGTTACCGTGGTGAAAGAGGAAGGAAACACTGCCTGCGAACTCAGTTTCCCCAAACCTGAGTCGTACTGGGACACAGTGATGAAAATCTGCGTGTTCATCTTCGCCTTCGTGGTCCCCGTCCTGGTCATCACCGTCTGCTACGGTCTGATGATCCTGCGGCTCAAGAGTGTCCGTCTGCTCTCCGGCTCCAAAGAGAAGGATAGAAACCTGCGACGGATCACCCGCATGGTCCTGGTGATCGTGGGGGCCTTCATCATCTGCTGGACTCCCATCCACATCTTCATCATTCTCATGACTATGGTGCATATCGACCGCAAGAACCTCCTGGTGATGGCCAGCTGGCATCTGTGCATCGCGCTGGGCTACACCAACAGCAGTCTCAACCCTGTGCTGTACGCCTTCTTGGATGAGAACTTCAAAAGGTGCTTCAGGGATTTCTGCCTGCCCTATCGCTCCCGCCTGGAGCAGAACAGCTTCTCCAGAGCGCGCAATAGCAAAAAGGAGCCCGTGTCTGTTTGTGCTCCTGcgacaacacagagacaaacggCCTGACTAGGCATGGATCAGTTGGGGGGAAGAACAGATCAGGGGGACCTCCAGACCGAGGTCACACAGTTCTCCAGCACAGGAGTCTGAGTCTGCAGATGTCTCCTTTTGTCCTGCCATTTATGTAAATTATCGATTGTGTTTTTGGTCTCATATAATGAAACTTATGAGACACAATTCTTTAACAAACAtgcctgtgtgtgcctgtgcataAGGAAATGGAATACAGATGTTCATCCTTGGAGTGTACAAAGCACATGCataatgcaaacacacatacagtgcagTCGCAAAGTATTGGGATAGTGAtgtgtttttcattgttttggctctgcacaacaaaaaaaaaataggaggTTAAAGTGCTGACTCTAAGCTTTGTTTGTAGGTCTTCACATCCATATTAGGTGAACAATGTAGGActctaaacacacagacagggccACTAAGAGGAGTCTTTTTATGGCCGAGCAGTGGCAGATGTATGATTGGGCGAGTCAGGCATGTGACCTCAATCCAACAGATAATGTGTTTCACTTGATGAAGAACAGACTGACTATGTAAATCAAAGTACAACGTAAGGTCCCGTGTAACAGAAAGAAGTGACGACGGCTGCAGTACAGAGCCGGCAGAGGGTCAACAGGGAAGATACTGCTGGCTGCTGATGACTGTGGGTCACAGACTTCAGCCAATCTGTTATATCTGTTATCTGTCATATTCAGCCAATATGATGACTTAATTCAGATTATTGTTAGCTTGTAAAATTACTTTTTATCCTTAAAATTAGGATAGCATTTATAAAAGACTACAATTTGTTGATGAAACCTTTAAACCTGAGATATCTACTTTCTTAACCGCTAGTGGGCAGAGGGAATAGctgtaaaacacaaaaatcaccTTTGTATATGGCTATGACAAacttgcctatttacacatccagcagttacagagcaacattataATTCATTTTAAGTCGTGTTTCttgctctttagctgctaaaagcTCACCACCAGTAATTCGCTAACTGTTTCTGTTTGCTTTTTGGTGTTGTGTACAATCGTTTTTTGGAGCCTTTCTTCTGAAAACGACACTATGAGTACAGTGAGACTGAACCAGAAAAATAAAGTGGGctctaaacaccaaaacaataagctgaaagatgctataaTGCTTTGTAGAGCTGAAGGCAACAGCAGAGTCTAGTGATAATTATCTGTGGGTTTGTCATTATGAGTGACTCATTTTACATTACACATAATCATTTCAcccattttttatataaattgtGCTTTTATAGCGTCTTTAAAGCTGGGTTTCTGTTTAATTTCACGTCCAAATGAGTACAGAGCCAATGCAATGAAAAATGTGTCTCCATCCTAACACTGTCTAAATGCAGTTGCAATGCTGTTTATCTAGACTGGTAATAGTATCGTCACTCAACCTCATTAGGGTGGTAATGTGAATCCAGTAGCGTGAATGTTTAGTTGAGACTATATTAAGACTAATTTCATGCTCGTTCTTGTGATCGAAAGAAGAGAAACCATTTTTAAAAGACGTGATTTCATTCTACATGACCACAGCACCATATTTCAGTGTCATTGCCCcccacatcagatacatcatgAAAGATCTTTGTGAAAGAAACCTTTAATAACTTGAAAATACGGCCTTCATGATTAAGCAGAGATGACTGACACTTCCCGTGTATATTCACCATGAACATCAGTGTTCAGCTGACTTTATTTCTACTACTCAGCTGAAAGTTAACTGAGGAGCTAAAGGCAAACGTGTTACTGCTGTTTTAATAGTTGTGACTAAATGACCTCAAACTGGCACGGAGGCAAGTCTGAATCGGATCAAACGCATTAGCAGAGAAGAAGCTTCCTACACATATTACAGCTAATGGAAAAGTTTCCACTGAGGATCTCTGTGCACTTGCAGGAAGAGATTATGACAATGAGAAGACATTTGTTTTGCAGATTTTGGAGAAGAATCAAACCAATGCCTCTCATCTTGCTAATGCAGCAGTgcagttttgtttaaaaaggcTTCTATATATCAAATGTAATGATAATATTGTTCTGTCACAGCATATTAAATGATACAGTGATTCATTTTGTTTCAATGTGCTGTCAAGCTGTTGTACCATTAAGCTTAATTTGAAACCAGTTAGtaaaatcaaatattaaatgactATGTATTTACACTAAGCGCTATAAATGTTAGTTAAAGCTTTCAAAATCGTCAAAAAGTAATTATTTTTCGTATCGCCTATCACCATCACTGAAGagcatttgtaaatgttttctgtagTCGGCAATATGTTCAGCTGATTGAAAATATGTACCGTATTGCCTTATTCAGCATTATGTTCTTTTTGCAAAAAGTGAATTGTTCTGTTGAGAAAAGCAGCAGATAGATtatataaagacattatatatatatgtcttttGGACACAAGTTGTATCTTGtgttttaatttgaaatattCTTGTAAATAACTTTCAGTTTTATtccaatattttgtgttttctgtggttGTTATTACATATGTTGTTAACATTTATACTCTTTGTAAATGCCAGTGAGGCCTCATGGGAATTAGACATGGAATGGATTATTGATCGGGGGGCAATGTTGTTGACAGGGACAAATAcgacacatctaaagtgcataTTTAAATGAAAGCATATTATGAAATAAGTCAGGGATGATATGAGGTTTCTGGCCACCAGATGCATTGGAGAGTTATCTATGTGTACAATGTATCAATACAAAAAATTAGGTTCTGATATTACTATCGTGGCTTATTTATGTGTTTAAATAGTTTTTGGATAACAAtcgagctctatggcacagaatAATAAGATATATCAGGATTTAGTAAGATCAATTCATCgttgtctttttgtcttttcacaCGATCTGTTGATAATAAGACAAATACACAGTCACATCCTTTTAACTGTTGTTAAAGTGACACAGGCACAAAGCCCTGAATGACAAATTCACACTAGCACTACATCAATGTTTTGGTATACTCAtcttggaggaaaaaaaaggaatgaaatAAACCACTGaactatctttttttaaataattcagATTCTCATTAAATTCGGATTATGTACTCTCGACTGCACGGGTCACACTgttttatactgtctatggtcacactgtagcctagaaatctagac

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004985 opioid receptor activity molecular_function

KEGG:

id description
K04213 OPRD1; delta-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 112827 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 154721 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 214121 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 551837 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 625759 16991716 ~ 16991989 (+) True G72879
TU97801 lncRNA downstream 300261 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 491026 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 501305 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 501305 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 501391 18125080 ~ 18126954 (+) False G73230
XM_039807047.1 mRNA upstream 24721 17584023 ~ 17593027 (+) True tcea3
XM_039807046.1 mRNA upstream 24721 17584026 ~ 17593027 (+) False tcea3
XM_039807049.1 mRNA upstream 24721 17584038 ~ 17593027 (+) False tcea3
XM_039807050.1 mRNA upstream 24721 17584041 ~ 17593027 (+) False tcea3
XM_039805507.1 mRNA upstream 50482 17562473 ~ 17567266 (+) True tent5ba
XM_039804751.1 mRNA downstream 116143 17739832 ~ 17741380 (+) True LOC120561605
XM_039804753.1 mRNA downstream 118197 17741886 ~ 17747026 (+) True stmn1b
XM_039804754.1 mRNA downstream 127241 17750930 ~ 17755055 (+) True paqr7b
XM_039806002.1 mRNA downstream 468614 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA downstream 468615 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XR_005639656.1 other upstream 157421 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 165180 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 248973 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1545547 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 2061796 15553464 ~ 15555952 (+) False irx4a
TU97725 other downstream 21824 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 127267 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 775367 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 775367 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 791409 18415098 ~ 18420327 (+) False kcnn4

Expression Profile