RNA id: XM_039804814.1


Basic Information

Item Value
RNA id XM_039804814.1
length 1703
RNA type mRNA
GC content 0.49
exon number 11
gene id bckdhb
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 3690413 ~ 3781647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGCCCTTCCTGTTCAGTCATAACAACAGTGATGGCGGCCGCAGCACGGTTCTTCATCCGAGGTGCACCCTTGAAACTTCCCGTCTCCGGTGTTGGCACCGGGGCTCAGAGCTCTTTTGAGGCAACTCTGCTGAAATTGTCACCGAACTCCAACTCCCGTACAACAACACAACGAAGACATGCAGCTCACTTTACCTTCCAGCCTGACGCCGTACCGACACAATATGGTCCCACCCAGAAGATGAACTTGTTCCAGTCAGTTACAAGTGCCTTGGACAACACTCTCGCCAGTGATCCAACAGCAGTCATCTTTGGGGAAGATGTTGCCTTTGGTGGAGTTTTCCGATGCACAGTGGGTCTCAGAGACAAATATGGTAAGGACAGAGTCTTCAACACTCCCCTTTGTGAGCAGGGGATTGTTGGATTTGGTATTGGTGCAGCTGTTGCTGGTGCCACAGCCATCGCTGAGATCCAGTTTGCTGACTACATCTATCCTGCTTTTGACCAGATAGTCAATGAAGCAGCCAAGTACCGCTACCGTTCTGGCAACTTGTTTGACTGCGGCAACCTCACCATTCGGGCTCCGTGGGGGTGTGTCGGCCACGGGTCACTTTACCACTCTCAAAGCCCTGAAGCCTTCTTCGCCCACTGCCCTGGCATCAAGGTTGTAATACCCCGTAGTCCAGTGCAGGCCAAAGGGCTGCTCCTCGCCTGCATCGCTGACCAGAACCCCTGCATATTCTTTGAGCCCAAGATCCTGTACAGAGCCGCAGTGGAGCAGGTTCCTGTGGAACCCTACACCATCCCACTCTCACAGGCCGAGATCCTACAGgaaggaagtgatgtcactctGGTTGCCTGGGGGACACAGATCCATGTGATGAGGGAGGTGGCCAATATGGCTCAAGAGAAACTGGGAGTGTCCTGCGAGCTCATCGATCTACAGACCATCCTGCCCTGGGACACTGAAACTGTTTGTAAGtcagTGGTGAAAACTGGACGTTTGCTCATCAGTCATGAGGCACCAATAACCGGAGGCTTTGCTGCTGAAATCAGCTCAACAGTACAGGAGGAGTGCTTCCTTAACCTGGAGGCTCCCATCAGTAGGGTCTGTGGTTATGACACCCCCTTCCCCCACATCTTTGAACCCTTCTACATCCCAGACAAGTGGAAGTGCTTTGAGGCAATTAAGAAGATGATCAACTACTGAACCCCTGTCAGGGGCCAACTTCTGGTAGCCCTGGGCTCCATCacctctccttttcctcttcatTCATCCAATCAGTGGAGAGGggccaggaaaagacactttgTTAATCATCCAATCAGGAAACGGTATCCAGATAGGCTCCATGTCCCCCTGTGTCTTCCAGCTAAAAGACTGTTACAGCTCCTCTGCATAGGGAACATCATTCTGTTgcaaggggaaaaaaattatttgaccCACTTCATTTGGTGAAACTCTGCTTTCAACATAATGCACATCATTTGATTTTCTCTTAAACAAGAGTTGGATACTGTGGGGGAAACTGTATTTGATTGAATTTGTgactgtctgcctctctgtgcTGTTACCTTTGGTTGAATGTGTCCAGCTCTGCTCTAATCTTTATTTAGTTTGACATTAATTGAACCCTATTGTACTAATGTAGTGGATCTGTGGTTTTTAATGAAATAAAGTATTAAGTATTGGTGAAAACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94270 lncRNA downstream 59076 3630679 ~ 3631337 (-) True G70408
TU94265 lncRNA downstream 73146 3617062 ~ 3617267 (-) True G70404
TU94258 lncRNA downstream 117325 3572856 ~ 3573088 (-) True G70397
TU94228 lncRNA downstream 214892 3473896 ~ 3475521 (-) True G70368
TU94223 lncRNA downstream 226936 3462653 ~ 3463477 (-) True G70364
TU94343 lncRNA upstream 27786 3809431 ~ 3819286 (-) True G70470
TU94358 lncRNA upstream 144716 3926361 ~ 3926625 (-) True G70480
TU94373 lncRNA upstream 245960 4027605 ~ 4027865 (-) True G70491
TU94392 lncRNA upstream 359997 4141642 ~ 4141870 (-) True G70509
TU94398 lncRNA upstream 373148 4154793 ~ 4155111 (-) True G70515
XM_039804817.1 mRNA downstream 249292 3438932 ~ 3441121 (-) True tpbgb
XM_039805131.1 mRNA downstream 356561 3270765 ~ 3333852 (-) True dop1a
XM_039805544.1 mRNA downstream 422312 3177501 ~ 3268101 (-) False snap91a
XM_039805538.1 mRNA downstream 422313 3172978 ~ 3268100 (-) False snap91a
XM_039805145.1 mRNA upstream 6871 3788516 ~ 3850585 (-) True ttk
XM_039804809.1 mRNA upstream 92782 3874427 ~ 3906370 (-) False sybu
XM_039804807.1 mRNA upstream 92782 3874427 ~ 3906370 (-) False sybu
XM_039804810.1 mRNA upstream 92782 3874427 ~ 3900100 (-) False sybu
XM_039804808.1 mRNA upstream 92782 3874427 ~ 3900100 (-) False sybu
TU94269 other downstream 60595 3629133 ~ 3629818 (-) True G70407
TU93283 other downstream 2957665 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 3661730 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 3662087 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 3663096 27245 ~ 27317 (-) True trnar-ucg_7
XR_005639920.1 other upstream 197666 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 290679 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 290679 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 290679 4072324 ~ 4077779 (-) True eny2
TU94371 other upstream 290679 4072324 ~ 4077779 (-) False eny2

Expression Profile