RNA id: XM_039804817.1


Basic Information

Item Value
RNA id XM_039804817.1
length 2190
RNA type mRNA
GC content 0.49
exon number 1
gene id tpbgb
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 3438932 ~ 3441121 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGACTCCCGACGTCTGGGAAAGCAGCAAGCTGGAAGTACGTAGCCCATGTATTAATACATGGGAGACAGAGGATAGTCTGTCTCAGAACCAGCAGCCCGACTAAGATATTGGTCATTCTGCGCCGGACTTCGACACAGCACTGGGACTGGAAACCATTCCGTAAAGCCTGAGGTTTGGAAGACAATCAAGAAGAGGGAAGCCTTGAAGTTTGCGAGCTTCGTCCGCATCCCCTTTATCTTCATGGAAACGTAGAGTTCACCTACACCAGGATGGTCTGGGGGTAGTTCTATGGAGTCTGAGTTGGCACTGGGAGCAGTTTTCGAAAAGATAAAGGCGGGAAACACAGTCGGAAAAACTTTCCCTTgttcaagaagaagaagaagacgacggTGAGTGGGTCGGATTGTTGTAAAGTAATCTTTACGCACGTTCTGCGCAGACAGATTTGCACAATCCAAGATGCGCCTGTTGAACACGTCGTGCGGATGTGACCGCGGAGAAATGCGAGCGAGAACACACATGTCCGGAATGTTGCGGTTTCTTTTCCTGCTCGCGGCTGTACTGTCATGTCACGGCTGTCCGGAAAAATGCTCTTGTGTCTCACAAACTGTGAAATGCCAAGACCTGGGCTTGGAAGCGATTCCGCAGTCTCTACCGGTCAATACCAAAATACTATTCGTCACAGGAAACAACATTTCCCGGATCAGTGTGGACTCTTTCCCAACCCGCCTGCAACTGTTGTCAGATCTCGATCTCAGTGGGAATGACGTGGAGTCTGTGGAGGCTATGGTATTTGACAACTTGCCAAACCTTGTGAGGCTGGACCTTAGCAACAACAGAATCCAGAATTTCAGCAAAAGAGCTTTCCCTGCTGAGAATAAAGTGCAGCACTTGGACCTCAGTAGGTCTTTCCACAATCATTCCTTCATGGATGTGGTCCTGAGCGTTCTTCAGAGTGGAAACCTCctccagctgacagtcttggaCCTGTCCAACAATAACCTGGTGATTCTTCCAGACAACCTATTCACCAGCCTCTCCAACCTGGTAAACCTCAGCCTGCAGAACAGCTCCATCATCTCCATCCAGAACGGGACGCTGAGGGTGCCGCCGCTGCTACACCTTGACCTGAGGGACAACAGCCTGAGGGACCTGGCCACCTCCACCCTGGCAGAGTTCAGCCTCAAGCCTGCACTCCGCATCCAGCTGGCGGGGAACCCCTGGCGCTGCGACTGCTTCATGGACGACATGCTCCAGTGGCTGAAAAACTCCACTCAGGTTGTTGACCTACAGAACCTGACCTGTGAAGACCCAGAGGCCCTGAGACGCCAGCCACTCCTGCAAGTAGAGCAGTCCCAGCTGAAGTGTTCAGGCGACATGAAAGGCGTGCTGGAGACTTCGTATGTTTTTCTCGGTCTGGtgctggccctgattggtgtcATATTCCTGCTGGTGCTCTACCTGAACAGAAAAGGCATCAAGCGGTGGATTTACAACATCCGGGATGCTTGTAGGGACCACATGGAGGGGTACCATTACAGGTACGAGTTAAACTCTGACCCACGTCTGGCCAACCTGAGCATCAATTCGGATGTGTGAGCGAGGACGGGACACTGTCTGGCACCCCGCAGTGAGATATTAAATGACTTACACTGTTAGATTTTGCATGAAAGTCTTCCTCcccttcccccaccccccccccacccacatgATGCTATTCAGATTTCACATCTGTCATGGCTCCTAATTAACCCCTCTCACAACCTCCATTTAACCACTGCCGCATGTCCAATACAAGTACCCGGCAGCTGTGATGTCAATTGCGTTCCTCCGTGTAACATTGCATGGAcaatgaatcttttttttttttttgtagagagTTGCAAAAGTGATATGTTCTATTTTTACTTTTCCTAAAGAATAAACGTATGGAGTACATTGACTTTTAAGTGAAAGAGAACAAAAAGACACTTTGCTGGTCATTGCATCCTTGTCATTATGCCTCTGCTGCAGAGAAATGCTCGTTGTAATGAGTTTGTTCTTTTTAACATGTGAATTTGTGATATACAACATGCCTCTTGAATAGTTATAGTGCACAATGCATAGTTTTTGGATTTTAGTAGGtggatgtaatttttttttttgctgtgaagCTATAAGGCTGAATAAAATGCCTCTGATTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94201 lncRNA downstream 716 3437975 ~ 3438216 (-) True G70344
TU94209 lncRNA downstream 2012 3436687 ~ 3436920 (-) True G70352
TU94092 lncRNA downstream 266421 3170329 ~ 3172511 (-) True G70262
TU94101 lncRNA downstream 310298 3128267 ~ 3128634 (-) True G70265
TU94078 lncRNA downstream 496814 2940922 ~ 2942118 (-) True G70249
TU94215 lncRNA upstream 13051 3454172 ~ 3454938 (-) True G70358
TU94223 lncRNA upstream 21532 3462653 ~ 3463477 (-) True G70364
TU94228 lncRNA upstream 32775 3473896 ~ 3475521 (-) True G70368
TU94258 lncRNA upstream 131735 3572856 ~ 3573088 (-) True G70397
TU94265 lncRNA upstream 175941 3617062 ~ 3617267 (-) True G70404
XM_039805131.1 mRNA downstream 105080 3270765 ~ 3333852 (-) True dop1a
XM_039805544.1 mRNA downstream 170831 3177501 ~ 3268101 (-) False snap91a
XM_039805536.1 mRNA downstream 170832 3172978 ~ 3268100 (-) False snap91a
XM_039804814.1 mRNA upstream 249292 3690413 ~ 3781645 (-) True bckdhb
XM_039804815.1 mRNA upstream 296547 3737668 ~ 3781647 (-) False bckdhb
XM_039805145.1 mRNA upstream 347395 3788516 ~ 3850585 (-) True ttk
XM_039804809.1 mRNA upstream 433306 3874427 ~ 3906370 (-) False sybu
XM_039804807.1 mRNA upstream 433306 3874427 ~ 3906370 (-) False sybu
TU93283 other downstream 2706184 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 3410249 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 3410606 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 3411615 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 3412302 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 188012 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 538190 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 631203 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 631203 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 631203 4072324 ~ 4077779 (-) True eny2

Expression Profile