RNA id: XM_039804824.1


Basic Information

Item Value
RNA id XM_039804824.1
length 2404
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC120561656
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22643346 ~ 22651387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTACATTTCTGAATATAGCCTATCTAATAGCAAAAAGACCAGGCTTTATTTTCAGTAGCTCACAGTAGCTGACCAATCGCCTTCTGAAACTAAAATAAACATTCATCTGCTTTCACACGTTGGACCAAACCCGCTCGGATCTAGAATAATATCTGCAATTCATCAGCTATTTAATCAATTTTCCGAAagattttctaaaatgttttacTACCCTACAGTTTTGAAGCGGCATACAGGATGTTTTTCTACAATCTGGCTGGTTGCTACAAAAGGCATCAGAGTTACTCGCCGGGATTTCCTAAAAGTCAACGTCCAAAGCACCTGTGATGACATCATGAGCTACGTGCTGGAGCAGGTACCACCCCCTCAGCCTGGTCTGCCACGACCTCGCTTCTCCCTCTACCTCTCCTCCCAGCTCCAGTATGGCGTCATCCTCGTCTATCACCGCCAGTGTGCTATTCTCCTTGCTGAACTTCAGTCCATCGTGGGCTATCTGTTAAAACAGAGGGCATCCCAGAAAATTGATATGGATGAGCACGGCAGACAAGCCCTGGACTACCCTGATGCCCTGTCTCTCCTGGAGGAGACAGAAGGAGCTCTTGACCCTTTATTCGGAGTGATGTACATGGGAAAGGCCATGCCCAGTCCTAATACACTGATACAGaTGGGTCAGGAGTATCCGAGAGAAAGCTCTCCTGAGCATCCTGAAATGACCAGTCcagcttctgctgctgcaccaGACAGTGGCATAACTGCAACTCCAGAAGCCATTActctgagagagacagagcctCTCACTATCCCTATTGCAGAGTTTGAGGGTGAGGAGCTTATCGATCAGCATCCAGAGACAATTGACTTCCTCTTGGCCCAAACGGATACCTTTCCAGAAGGAGATTTGGAGATGCCAAGAGAAGATGTGACACCAGGAGAGCAAGAGGCGGAGATGGAAAGGGGCGGAAGTGAGGAAGACCTGGAGAAACAGAGAACAAAAGAGCTCACAGGATCCTCTATCGAATTACAGCCCACCACTCTGTCCAGTGAGCACGCCACGTTGTTGCCTCAGGAAGAGCCAGACCTGGCCGTGGAGAAGCCTGGACCCCCCTCAGACCAGGTCACCCCCGTCTCTGTGCCCGTCCTCCCCTCCCCACCATCTGCAGTGGAGGAACGTCAAAGACGAACTCTACAGTCAGAGGATGTGCTGCCtccagagaggaggaggaggaggaggaggacgaggcaGCTGATCTTCTTTGACCCGGAGACGCAGATCCCccaggaggagctgcagcagcagatagACAACCCTCTGTTTGAGACCAGACGTCCACTGTTCGCACCGCCTCCTTCTCACAGGATGCGCCCCGCTGCTGAGCTCCTCGAGAATCCCTGCCTGCCCTTCTTGCCTGAAGAGGTGTTGTTTCTATGGAGACGGGCTGCGACCATTAGGCCTCTCTCAGGCTTGGACCAGCAGGTTGGGCAGAGAGGGCCCGAGTCCACCGACTCTGAAAAGGAAAGAGAGCGCGAGATGGCTGAGGCCGCCGAAAGAGAAGAGGGGAAACTTGAGCTCCTGACGGAGgTCCCCAGAGATGTGGCAGAATCAGAGAAGTTGGATATTTCAGGTCCGCTGTCTCCAGGTCTGTTTCTACACTGCAGGACATCCCAGAGGCGGTGGACGAGTTGCTGGGGAGAGCTGCAGCAGAGTTTCCTCCTGGGCTGCTGCTGGATTTTCCCGAGCATGGAGAAGAACCTTTGCTGTTTCAGTCTCTTCTGCCACCAGAGGTCGACCGCAGAACTGTCAGCAACATTTTTCAGAGGCTCCTGGAGACTTTATCGGCCAGGAAACTACGTGCGGAGCAGGACGAGCCTTATGGTGACATATTAATATTACCTGGAGCCAACTACGAAGAGGGGAATCTGAATTTGTGATGTGTACACGGTCACTCGAGTCCCCACGAGCCTCCTAAACAAACATCATTGTTCAGTCTGGTAGAAGATTATTTGTCTGTTCCTGACATTTCCTGTGTTCACTTCATCCGAGAGAAAAAACATCTGGATTTAAAACAATGTCATACAAGACAAATATGCATAGAAGTCAAATGTTTAGTTACTAATCACTTCATAAGATTTGTCATTGGTGTGACCTGTTGACATGCTTGAAATTATTGAAGTTTTTAAAACCTGCTGGTTTGTATAATTTCCAAAAGCAAATCATTTGTCCCTTTTGCTACTGTGACCAACAAGTTTTATTAATTCTATGAGATTTCAGATGagtattttaactatttttatggttgtatttttttaaagacattacCTCATGTTAAGCTGCACAGAAGTTCTGGTTAATGTAAGTTATGTGTCCCTTTGAACAtgaactacaaaataaaaactttcgAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100051 lncRNA upstream 17393 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 330831 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 387868 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 397583 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 400313 22242817 ~ 22243033 (+) True G74764
TU100074 lncRNA downstream 53485 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 162657 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 267365 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 273205 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 331505 22982892 ~ 22987322 (+) True G75065
XM_039807302.1 mRNA upstream 268 22629617 ~ 22643078 (+) False setdb1b
XM_039807304.1 mRNA upstream 268 22629617 ~ 22643078 (+) False setdb1b
XM_039807303.1 mRNA upstream 268 22629799 ~ 22643078 (+) True setdb1b
XM_039805307.1 mRNA upstream 15814 22627347 ~ 22627532 (+) True LOC120561960
XM_039805306.1 mRNA upstream 20268 22610018 ~ 22623078 (+) False arnt
XM_039804708.1 mRNA downstream 251 22651638 ~ 22657098 (+) True clk2b
XM_039806263.1 mRNA downstream 9755 22661142 ~ 22667885 (+) True LOC120562537
XM_039806261.1 mRNA downstream 16529 22667916 ~ 22674134 (+) True LOC120562535
XM_039806262.1 mRNA downstream 16530 22667917 ~ 22674134 (+) False LOC120562535
XM_039806259.1 mRNA downstream 22890 22674277 ~ 22687960 (+) False pklr
TU100045 other upstream 20262 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 20262 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 57774 22559945 ~ 22585572 (+) True celf3b
XR_005639857.1 other upstream 153402 22469978 ~ 22489944 (+) False rprd2b
TU100065 other downstream 9092 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 162657 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 248757 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 839738 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 1112928 23764315 ~ 23764645 (+) True LOC120563205

Expression Profile