RNA id: XM_039804860.1


Basic Information

Item Value
RNA id XM_039804860.1
length 853
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC120561675
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25360758 ~ 25362313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGATCACACAGCAAACCATGAGGTCTCTGGTCTTCGTTCTGCTTATTGGAGCGGCTTTTGCCACGGAGGATGACAAGATTGTCGGAGGGTATGAGTGCACGCCCTACTCCCAGGCCCATACGGTGTCTCTGAACTCTGGCTACCACTTCTGTGGGGGCTCCCTGGTCAACGCGAACTGGGTTGTGTCTGCTGCTCACTGCTACCAGTCcCGTGTGGAGGTGCGTATGGGAGAGCACAACATCAAGGTCACCGAGGGAAACGAGCAGTTCATCAGCTCCTCCCGCGTTATCCGCCACCCCAAATACAACTCCTACAACATCGACAATGACATCATGCTGATCAAGCTGAGCAAGCCCGCCACCCTCAACCAGTACGTGAAGCCTGTGGCTCTGCCCACCAGCTGTGCCCCCGCTGGCACCATGTGCAAAGTCTCCGGCTGGGGCAACACCATGAGCTCCACTGCTAACCGTGACAAGCTGCAGTGCCTGGACATCCCCATTCTGTCTAAGACCGACTGTGATAACTCCTACCCTGGCATGATCACCAACTCCATGTTCTGCGCTGGATACCTGGAGGGAGGCAAGGACTCTTGCCAGGGTGACTCTGGTGGCCCCGTCGTGTGCAACGGTCAGCTGCAGGGTGTTGTGTCCTGGGGCTACGGATGTGCTCAGAAGAACAACCCCGGTGTCTATGCCAAGGTCTGCATCTTCAAAGACTGGCTGGACAGCACCATGGCCAGCAACTAAGTGATCCAAACAAGCAGGTTCAGTCAAGCAGCTCAACATCTTTTGCTGTTTATGTTCCATCTTTTGTACTGACAATATGACAAATAAACAATTTAAAGCAAATCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101653 lncRNA upstream 13542 25346263 ~ 25347216 (+) True G75977
XR_005639632.1 lncRNA upstream 24800 25335016 ~ 25335958 (+) True LOC120561670
TU101606 lncRNA upstream 215954 25144579 ~ 25144804 (+) True G75943
TU101605 lncRNA upstream 216484 25144058 ~ 25144274 (+) True G75942
TU101604 lncRNA upstream 245001 25115556 ~ 25115757 (+) True G75941
TU101701 lncRNA downstream 11894 25374207 ~ 25376989 (+) True LOC120561674
TU101753 lncRNA downstream 180086 25542399 ~ 25596454 (+) True G76055
TU101801 lncRNA downstream 243837 25606150 ~ 25617478 (+) True G76083
TU101800 lncRNA downstream 248088 25610401 ~ 25617478 (+) False G76083
TU101807 lncRNA downstream 262117 25624430 ~ 25696175 (+) False G76089
XM_039804847.1 mRNA upstream 2899 25348120 ~ 25357859 (+) True LOC120561668
XM_039804846.1 mRNA upstream 2899 25356437 ~ 25357859 (+) False LOC120561668
XM_039804842.1 mRNA upstream 16066 25294256 ~ 25344692 (+) True tmem145
XM_039804837.1 mRNA upstream 67488 25262018 ~ 25293270 (+) True lipeb
XM_039804857.1 mRNA downstream 6016 25368329 ~ 25371056 (+) True LOC120561673
XM_039804859.1 mRNA downstream 12399 25374712 ~ 25380798 (+) False LOC120561674
XM_039804858.1 mRNA downstream 15965 25378278 ~ 25380798 (+) False LOC120561674
XM_039806603.1 mRNA downstream 37927 25400240 ~ 25422572 (+) True bcl3
XM_039806604.1 mRNA downstream 60537 25422850 ~ 25436271 (+) True ddx61
TU101448 other upstream 371639 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 923939 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 923988 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 1306430 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 1328313 24031390 ~ 24032445 (+) False atn1
TU101741 other downstream 129501 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 140287 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 777588 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1445805 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 1521137 26883450 ~ 26886546 (+) True G76355

Expression Profile