RNA id: XM_039804868.1


Basic Information

Item Value
RNA id XM_039804868.1
length 2274
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC120561682
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37565756 ~ 37568029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGGATCTTTTCTTGTATGAATGACATGAAAGACAAACAAAGAAGTGGTAAACAGTATGTAATAGGGACAACATCTTTATTAAATAGTGTGGCATGAAACTGAACCGGACAAACTGTGAAAATGAAGCTCCGCCCCTCACATGACTCACCGGAGATAAAACAGGGaagcaggcacacatacacacacacaatagttgTGTGTGAGTTTTAACTTCAGATAAAAAACACTACTTCTACTGAGAGAGAACATCTACAAGAAGGAGTTCTGGGAATACTGGAATACTACACTTCAACCAGCTGCTGAAACCACAAACTGAATGTGAGTTTTATAAGAACAAAGACTCAAAGTGAAAGTAACTTTCAGGGAAAAGTTGAAGTGGCtgagctgtctgtctgctgtgtttCCGTCTTCACTCGGAGACTAAATGGCTTCCAGATCAGAGGAGGATCTCTGCTGTCCGGTCTGTCAAGATGTCTTTAGAGATCCTGTTGTTCTGTCatgtagccacagcttctgtaaGGACTGTCTGGAGAGATGTTGGAGAGAGAAACCAACACAGGAGTGTCCACTTTGTAGGAAAAGATCCTTGTCTAAACCACATGATAGCCTGGTGTTGAAGAACCTGTGTGAGGCCTTCATACAGGAGAGAGATCAGAGATCTTCAgaggctctctgcagtctgcactctgagaaactcaaactcttcttTCTGGATcatcagcagccagtgtgtCTTGTCTGCAGAGATTCAGAAAAACACACCAATCACAGATTCAGACCCATCAGTGAAGCTGCACGACAACACAAGAAGGAACTTCAGGAAACTTTGGAGCCCTTAAAGGAGAAGTTAAAGGGTTTTGAGCAAGTTAAAGTGAAGTGTGATCAAACAGCAGAACACATAAAGGTCCAGGCCCGACGCACAGAGATGCAGATTAGGAAGCAATTTAAGAAGCTTCACCAGTttctagaagaggaagaggaggccaggatGGCTGCACTGAGGGAGGAACAGAAGCAGAAGAGTCTGAGtatgaaggagaagatggaggctctgagcagagagatagcagctctttcagacacagtcagagccacagaggagcagctgagagctgaagacatctcattcctgatcaactacaaggctgcagtggaaagagtccagcagcaccccctgctggatgatccacagctgctcccaggagctctgatagacgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacatgGTCTCCTACACTCCTCTGATTCTGGATCCAAACACTGCTTATCTGCAAAACATCCTGTCTGAAGATCTGACCAGTGTGAGACGAGGAGAACAACAGCAGCTCCCTGATAATCCAGAGAGATTGGATTACTACTGTGGTgtcctgggctctgagggctttaactcagggactcacagctgggatgCCGATGTTGGAAACAATACACTCTGGGAACtgggtgtgttagcagagtctgTCCAGAGGAAGGGAAAAATACGGTCTGGAATATGGAGCATAGTGTTCCATAACGGTAACTACTTCGCACTGTCACGACCAGATTCAGACACTGTTCTTGTATTGCAGAAGAAGCCCCAGAGGGTCCgagtgactctggactggaaCAGAGGAAAGCTGTCGTTCTATGATCTTggtactaacacacacatacacaccttcacacacactttcactgagagGCTGTTTCCATTGATTGACACTAGGGGGGAAGTGAAGGTTTTACCGCTGAAGGTCTGAGTGACTGTAGAACAGAGTTCCCGTGTTCAATTATTggttaaaaaacacttttaatcAATAAGTATTTTGTGTCGATTGTAAGTTATTCATCTTAGCAACATGATGTTGCTCtttcattttacatttacatgctTCCATTAGGCCAAATTAtacaaaccaatcaatcaaCTATGCAGACGACAAATTTGGCTTTTCAGGGAGGTGCGCTCTCTCTTCTAGTTTaaggttgtttttgttaatgtcAAAGTTTATTCTTTTGAACAGATCTATCAGTACATTCATTGAGTTTAGGAAATATGCtagctcttgggggaattactggaattgttgtttttttgtaaattgtagagtgtggtctagacctactataTCTGTAAAGTGAAAGATAACTCTTCTTATGATTTAATattattaaaggtgcagtaggtaagagttataaaactaactttgtcatatttgctgaatctgaccctatgttccagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639871.1 lncRNA upstream 4970 37556675 ~ 37560786 (+) True LOC120562911
TU105716 lncRNA upstream 15154 37530690 ~ 37550602 (+) False G79007
TU105725 lncRNA upstream 22211 37542905 ~ 37543545 (+) True G79011
TU105713 lncRNA upstream 32630 37530690 ~ 37533126 (+) False G79007
TU105708 lncRNA upstream 32687 37530690 ~ 37533069 (+) False G79007
TU106101 lncRNA downstream 39156 37607185 ~ 37645567 (+) True G79262
TU106131 lncRNA downstream 165179 37733208 ~ 37733727 (+) False G79284
TU106141 lncRNA downstream 165179 37733208 ~ 37748007 (+) False G79284
TU106143 lncRNA downstream 166433 37734462 ~ 37797202 (+) False G79284
TU106129 lncRNA downstream 169803 37737832 ~ 37786362 (+) False G79284
XM_039805212.1 mRNA upstream 140936 37404963 ~ 37424820 (+) True tmem116
XM_039805207.1 mRNA upstream 173764 37387117 ~ 37391992 (+) True LOC120561882
XM_039806177.1 mRNA upstream 187972 37362224 ~ 37377784 (+) True LOC120562463
XM_039805209.1 mRNA upstream 206131 37354983 ~ 37359625 (+) True LOC120561883
XM_039806782.1 mRNA downstream 9450 37577479 ~ 37578431 (+) True LOC120562860
XM_039806179.1 mRNA downstream 10568 37578597 ~ 37579855 (+) True LOC120562465
XM_039804927.1 mRNA downstream 15094 37583123 ~ 37586138 (+) True LOC120561715
XM_039806183.1 mRNA downstream 138076 37706105 ~ 37709961 (+) True LOC120562469
XM_039804711.1 mRNA downstream 149339 37717368 ~ 37720029 (+) True LOC120561575
TU105717 other upstream 32687 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 32687 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 133077 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 636885 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 861891 36691393 ~ 36703865 (+) True LOC120562457
TU106195 other downstream 310935 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 488387 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 519947 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 602025 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 602025 38170054 ~ 38320429 (+) False G79351

Expression Profile