RNA id: XM_039804875.1


Basic Information

Item Value
RNA id XM_039804875.1
length 4030
RNA type mRNA
GC content 0.48
exon number 22
gene id l3mbtl1b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21315069 ~ 21329447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATTTTTAAACAATACAGGCGTTAATACTCATTTATTGCCGTGAACAGTAGCACAGTTTGAAAAAGCGGCCTTCGTCATGCTAATTAGCGTCGGGGATATCAGAGGAGTGGGAATGACCGACACTCCACCCAGTGATGGCCCCTCCCAGGGAGCAGAGTTTGACATGATGGGTGCTCTGGACTGGAAGGATGGTATTGCCACACTGCCGGGCAGTGACATCAGGTTCCGCATGACAGAGTTTGGGACTCTTGAGATTGTCACAGACCTAGAGGTCAAAGGGCAGAAGGCAGAGCCTAATCGCCAGACCTTGGACCCAGCACAGTCTCACACTCCTACCCCTCCACCAGAGGGCCAATCACAGACTGGCACAGCCACAGctccagccaatcagagtcagcCAGGATTGTCTCAATGTAAAGCCCCCGGTCCTGTGCTTCTGTCTTTAGAGGAGGGCCCCAGCATGGAGGGCCCCAGTGTGGAGGTTGGTCCCAGTGTTGAGGTTGGCTCTAGCGCAGACATGGGCCCAAATGGGGAGATGTCAAGGTGCCGGGCCTGTGGTGGCCATGTTCCCCGGGACACCCTCCTTCAGGGCAAATTCTGTAGCTCCATTTGTGCCCAGCCCTCCAGTGGCAGATCCTCTCCAGGGGAAGCAAGGGAGAGTCAAAGTGTTGAGTGTGAGAGGCTAGGTAAACGTGTGCGCAAAAAGAGGAAGATCTATATGGATTCtggtgatgaagaggaagacaaCCAAGAGGAACCAGAGGAAAAGGCCAAGACTACCAAAGGCAGAAGAGGTGCCAAAATTGCCAAACTGGTTACTGCCCCAGCCAATAAGAAACGGGCATGGAGCTGGCCAGCTTACTTGGAAGAGGAGAGGGCCATCGCTGCTCCTGTTAAACTATTCAAAGAGCACCAGTCGCTTCCTCAAAGCAGGAACAGTTTTAAGGTGGGAATGAAGCTGGAGGGGCTGGACCCGTCTCACCCGTCTCTGTTCTGTGTACTCACTGTTGCAGAGATTCAAGGCTATAGGGTCAGGCTTCACTTTGACGGTTACCCAGAATGCTACGACTTCTGGGCCAATGCTGACTCGTGGGATATGAAACCGGCTGGCTGGTGTGAAAAGAATGGGCATAAGTTATTGTTGCCTAAAgGTTGTAAGGATGGAGAGTTTAATTGGAGCATGTATGTGAAGAACTGTAGGGGTCAGCTGGCCCCAAAACACCTTTTCAAGAGCCTCAACACAtcgGTGACTCCGTCTGGATTTAGAGCAGGGATGAAGCTGGAGGCGATTGACAGGAAGAACCCATCATTGATCTGTGTAGCAACcattgctgctgttgttgacaACCGACTGCTCATTCATTTTGACAACTGGGATGACACATATGATTATTGGTGTGATGCTAGCAGTCCATACATCCATCCTGTGGGATACTGTGAAGAGGCTGAGCTAACTCTGACCACTCCAGCTGGTAAGACACAGACCAAGACACACGTGGAATATAAGCAACCCAAGACTTTCTCATGGGAGAAATACCTGGAAGAGACGGGCACACAGGCTGCTCCTGCGCGCGCTTTCAAACCGCGACCTCCACATGGCTTTCAGATTGGGATGAAAGTGGAAGCTGTGGATAAGAGGAACCCCATGCTCATCCGTGTTGCAACTATAGCGGACACAGAGGACCACCGACTAAAGATTCATTTTGACGGCTGGAGTTCAGAGTATGACTACTGGGTGGAGACAGACTGCCCTGATCTGCACCCTGTAGGCTGGTGTCAGAAAACCGGTCACCCACTACAATACCCTAACGgctcCAGTGATTTAGTAACTGCCCCAGGACAAGGATGTCCTACCCCCGGATGCAACGGGGTTGGCCACATTAGAGGACCTCGCTATGGGACCCACTACACtcagGTGAGCTGTCCCTACTCAGAGATGAATTTTAACAAGGAGGGCTTGCTGCCAGATCGCCTCAGCGGAGAACGACCCCTCGCCCTCAGTGGACCTCATCCACGTGGGCGACGACCGGATCCTCACACAAACACTACAACACAGACCTCCGCAACGCCTGACCAGCTGGAAGGAGCTGAAGACTCCCAGAACAGGAAACCGGTGACATTGGAAGCTGAGCGTTTAGGATGTAACGCTCAGCTGGAGCCACCGGGTGGAGCCAGTGAGCGGAGCCACAATGGAACGAGGCCTAAAAGGACGGCTCCAGTTCCCAAATACCTGAAAATGCACTACGTTAAAGAGGAGATTGGCGATAGTAAAGCCTCTCCAGACGCCATCTCTCTCCAGCAGGCCCTCCACGAGTCTGTGTTTTCCCCCGGCATCTCTGCCTCCCCCCCTCACCGGGTGGCTCTCTGCTGGGACAAACACTGCCAGCTGCTGCCTGAGGTCCTGGGGCTGACTGCCAAGAGAGTGGCCACTTGGAGTGCTGAGGAGGTGTCCACTTTTGTCAAAGGACTCCCAGGATGTAAAGAACATGCTGCTACATTTAAAACCGAGCAAATAGATGGCGAGGCCTTCCTGCTGCTCACCCAAGCAGACATTGTCAAGATCCTGTCCATCAAGTTAGGACCCGCCCTGAAGATCTACAACTCCATCCTCATGTTGAAGAACTCAGACGAGGAGTAAGACCAGACTCGACTCTGCTCCCTCCTCACCGGTCCTTCAGTGTCGGTTTCATCAACACTCAGCTATAAGACACGTGATCAAATCCGCCAGAACAGGTTTCGCTCTGCAACAGTGCAGCTACACGAGAGAAACAAGTGGAAGCCATCATCTCAGAAAAACGTCCATCCctgtcccctctctccctcctctctccatgaTGGACAGTACTGATCAACCTGAGGGAGAGTTTTACATGATACCATGAGGATTCCTTGACTTATATCGTGTTTGTTTActgaatcatttaaaaaaaaaactaaaggcaCCTTCAATGCTTCTTAACATTGTACGGTTTCTGAATTGGATTGTGTTATAATTCTGttgcatttcctgttttatttgaaATGTAATGATGCTTGAGCTCAGAGCAGACGAAACAagagtttattatttttttttttttaaagctgcaaaAATACAATCGTGAGGTGGTGagaggttttaaaaatgtgaaaccCTGTGGAGCAGAAGCACTATGTAGTTCAGTCTTTGTCCTCTAGATGGAGATAGCAGGCCACTCCACAGACCTGAAGGCAAGAGAGTTTGATTAAATTGGAGTTGACTGAAACTTGGATTGAATGGGGgatggtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagtgacTAAGTGTTTGAGAAATGAGGATGtaatttctaatttttttttttatggtcatTGGATTGTTTTGTGACGAGCATGGCTAGGCTAAGGGCTAAAGTTGAATCAAGGAAACTTGCAGTCTTTTAAGGTGGAATGAGACAACAAACCAGCTCTGTTCTTCTCTAtctgcttttttgttttgtttttgagaaTGGCACATGAATATGAATGTTAAAAAACAGCtttcagttgtttttgttgATATTACCTTGTTTGGTTCATTCACATTGTAAATAGTATACAGTTACAAAAGGACTGTCCTCGTTCCCTAACAGAGTTTACTCCTGCTTGGTTATGCAAAGGCTTGACATCTGTCCACCGGGAAGGACATTGTGACAGTGAACTGAAAAATATGAGCTTCAATTCATACAaagattttgagaaaaaaaaaagaaagaaaccttGTCAGCATCTTTGTAAATCAGCGTGTACTTCAGCAACTGTTTATATGCAAACGGCTTTTATTTATGTCTTCTTATTTAAAGGGCCATGGTATGCTGTCTTTGGCTTTGAGGTAAGCTGTGGCTGTTTGATGGAAAGCGTGTGAATGGGTGAAAATAAATGAGATGCACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99367 lncRNA upstream 23141 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 25207 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 26146 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 71954 21243229 ~ 21243567 (+) True G74274
TU99287 lncRNA upstream 163009 21150389 ~ 21152512 (+) True G74233
TU99494 lncRNA downstream 5222 21334669 ~ 21335693 (+) False LOC120563169
XR_005639855.1 lncRNA downstream 395501 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 706831 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 754235 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 761173 22090620 ~ 22091916 (+) False slc50a1
XM_039804883.1 mRNA upstream 3455 21308878 ~ 21312066 (+) True sgk2b
XM_039806855.1 mRNA upstream 46667 21256725 ~ 21268854 (+) True esrp1
XM_039806856.1 mRNA upstream 46667 21256725 ~ 21268854 (+) False esrp1
XM_039806857.1 mRNA upstream 47936 21256725 ~ 21267585 (+) False esrp1
XM_039805737.1 mRNA upstream 75093 21235760 ~ 21240428 (+) False rnf41l
XM_039807317.1 mRNA downstream 1965 21331412 ~ 21336665 (+) False LOC120563169
XM_039807319.1 mRNA downstream 1986 21331433 ~ 21336665 (+) False LOC120563169
XM_039807316.1 mRNA downstream 2234 21331681 ~ 21336665 (+) True LOC120563169
XM_039806311.1 mRNA downstream 32147 21361594 ~ 21387306 (+) True fam171a1
XM_039806312.1 mRNA downstream 40114 21369561 ~ 21387306 (+) False fam171a1
TU99269 other upstream 304150 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1666010 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2156526 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 2156526 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2568846 18744662 ~ 18746675 (+) True LOC120562824
TU99513 other downstream 73680 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 269608 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 440101 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 803131 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 808118 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile