RNA id: XM_039804888.1


Basic Information

Item Value
RNA id XM_039804888.1
length 3030
RNA type mRNA
GC content 0.54
exon number 11
gene id nagpa
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35448568 ~ 35489477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTTTTGGTTCGTTTACTAAGATGTTGAGCGCTAGCTGGATAATGTAGGAACcagcaggaggagaggagagtttGGCAGGCTAGTTTTCCTCATATGGCAGAAGTGTCGGTCAAATGCCCGTTTGTGTGGCTGCTGCTGTGGCTCTGCGTCCGGCTGTCCGAGACCAAAAACACTCGAGTCTCTGTGGGCGATGACATCCTGCAGCCCTACGCCCACGGCCACGGCCCCTCCCATTCTCACCGCCATGTCAGAGACTGTCAGCCCGTCGTCCATGGCAACAGCACCTACGAGAGCCAGCCCCCCAGCCATCACAGCCGCCTGCCGGTGGCCGAGTCCACGGTGTTTGTGTCAGACGTGCCGGGGAGCTCCAGAATGGTTTACGGTCACATAACGGCGGTCCAGGACCCTCTGAGGACGGTGTCGGTGTTGGAGCCGGGCGGGCCGGGCGGCTGCGGGATGAAACAGAGGGCCTCGGTGGAGGAAACGGCCGAGGCTGCCGGGTGTCTGTACGCCCAGAACGCCGGCTTCTTCAACACGTCGACAGGCCGCTGTCTGGGCAACGTGGTGAGCGACGGCAGGGTGGTGCAGGACAGCGGCGGGGTGCAGAACGCCCAGTTCGGCATCAGGAAGGACGGCACCCTGGTGTTCGGGTATCTGTCCCAGGAGGACGTGCTGGACCAGTCCAACCCGTTCGTCCAGCTGGTCAGCGGCGTGGTGTGGCTGTTGAGGAAGGGCGAGGTCTACATCAACCAAAGCCTGAAGGCCGAGTGCGACAAGACGCAGGAGACGGGGAAATTCCGCACTTTTGTGGACGTGGTGTCGGCCAGGACGGCGGTGGGCCACGACGCCGAGGGCAAACTGATCCTGTTTCACATCGATGGGCAGACTGGAGTCAGGGGTATGAATCTGTGGGAGGTGGCTGAGTCTCTGAAGAGCTACGGGGTCATCAATGCCATCAATCTGGACGGAGGCGGGTCTTCCACCTATGTGACTGGCGGCTCATTGGCCAGCTACCCCTCTGATCACTGCGTTACTGACGACAGGTGGCGCTGTGCTCGGCCCGTCTCCACCGTCTTGTGCGTTCACCAGCGGCGCTGCCAGCCGGCAGACTGCAACGACCACGGGGACTGTGTGGACGGACGCTGTCGCTGTCATCAGGGCTGGCAGGGTGAAGAATGTGACTCTCTGGTGTGTCAGGCGCCGGCCTGCGGCCCTCACGGTGTCTGCACTGCCGGCGGTTGTGTCTGTGATGCTGGATGGAGAGGAAAGAACTGCAGCCAagCGTGTCCTCTGGGTTTCTTCGGGCCGTCCTGCGCTCAGGAGTGTCGCTGTGACGACCAGTGTCCATGTGACCCGCAGACAGGAAGCTGCAACGCCACGCTGCCAGGAGAGACCAACTACACCTTacacagagCTGGACACTGTCTTGCCAAACAGATGTTTACATCGTGGAGACGAGATAAAGAAGCTCACCGAGAGCAGCCTCATCTGACAGAGCGTTCCTGGCTGCTGATCACCTCCACGCTGGCCTCCCTGCTGTCAGCCAGCCTGCTGCTCCACTTCGTACGGGCGTGTCGCGGCGCGGCCGCCGCTCACTTCCCCGAGCGCCGAGACTACTCCTACGTCCCGCTGGCCGACATCAACGGAGCCGATTCGCGTGCCGAAGCCCGGTCCAGGAAATCCGGGTTCGGAATGGACGACTCGGACTCTCAGGATGAAATCTGGTCCCCGTCGCAATCGGGGAGGTCATGAGCCGCGTCGCGAAAGGACGGGAGAGCCGAGGACGCTCTCCGCGCTAGCGCACAAAGACGAAGCATTCCTCTTGCTTACTTCAATCTTCTAATCTTGTCAGATTTCAGCCGGACGATCCTGCTGAATGAAAAAGGAAGCTATAGGACCGAGCACAAACCGTTTTGTTACATCCTTTTTCACTCCGCTGGCAGCTGGTGAGATCTTTGCTCACGTTTGTGTTTACAGCCGACGCCTTCTCATCTGACGATGAAAGGAAATCCTCAAAAAGACAGAGGTCAAAGCTTTATTTCTGGAATGTCTCAATCCCAGCTCCAGGTAGGAGAAGCTTTCCACCTTGCTGCCATGAAAACTGATCATGAACTTTGATCTACATCCAGGGGCCTGTATCACAAAGTTATCCAGCCAGCTTTGagcttaaaggacaaatccagcgccaaatgaacctaggggttaataagacatgggtaccaagtcgaccgttctctgggatatgttttcatgctaatccaatgtgaccagttttagcgcaaaccgctaattagcttgtaGCGCTAGTCGTCAGGGCATgcgtaaagtaaaaagaaatctctatttctacaccactaacaaggctcaaaatagcaccacacttccacagtagcataatgagggtccctacatgtaaaccgaagcattgagaactttgtaagcgTACAGAcggtttattaaaaacatagtttataaagtaccgttcacgtatacaggcaggcgccatcttgggaaagcaGTCATGACTATTCGAACTAAGTATGAAGCTAAAACGGTTGataataggtctcctttaagCTCCGCTCAGCGACTAAGTTGAACTTCATGACGCAGGCTCCTGGTGTGAAGACATTTTCAACTTGTTGCCACGTAAACGGATGAACTTTGAACTCTCACCGTGACGTTTTAAAACAAACTGTTACTAaggtgttttttaatttttttggggggggccaGGCAGTTTCTTATCAACATGGGGACATTTTTAGATGTTTTGTCATAATGCACTGAGCTCCATCTGAATGTAAAATAACTGCGAAGTTAATGTGCACGAAGAAGCACAATTTTCTCCAAACGACGCCACGTACAGTATATTTGCTCAGTTGAAACTCTCTGTTCGTATCTtatcaagcttttttttttttactgctcaCTGAAAAAACATTCTTTATAATGTCATTTGTGAATGTCACCAAAACtctgaaataaatacatgtgaatATCAGGATTCACTTTTGACAACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105074 lncRNA upstream 54969 35393133 ~ 35393599 (+) True G78592
TU105070 lncRNA upstream 58685 35389515 ~ 35389883 (+) True G78588
TU105027 lncRNA upstream 92083 35356023 ~ 35356485 (+) True G78551
TU105019 lncRNA upstream 95753 35351591 ~ 35352815 (+) True G78549
TU105010 lncRNA upstream 98190 35348975 ~ 35350378 (+) True G78544
TU105101 lncRNA downstream 8883 35498360 ~ 35498738 (+) True G78607
TU105092 lncRNA downstream 38998 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA downstream 38998 35528475 ~ 35531724 (+) False G78603
TU105163 lncRNA downstream 85695 35575172 ~ 35577811 (+) True G78645
TU105172 lncRNA downstream 153429 35642906 ~ 35643353 (+) True G78653
XM_039804894.1 mRNA upstream 86047 35357254 ~ 35362521 (+) True LOC120561699
XM_039806874.1 mRNA upstream 218256 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 247174 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 247174 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 265011 35177408 ~ 35183557 (+) True cd83
XM_039804889.1 mRNA downstream 18856 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 45570 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA downstream 45767 35535244 ~ 35546748 (+) False ccne2
XM_039804892.1 mRNA downstream 45817 35535294 ~ 35546748 (+) False ccne2
XM_039805911.1 mRNA downstream 132283 35621760 ~ 35630081 (+) True LOC120562274
TU105077 other upstream 39886 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 260369 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 592036 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 904189 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1412601 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 376365 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 648282 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 804510 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 902775 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 902775 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile