RNA id: XM_039804889.1


Basic Information

Item Value
RNA id XM_039804889.1
length 4118
RNA type mRNA
GC content 0.49
exon number 4
gene id tp53inp1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35508333 ~ 35528009 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaagaaggAGCAGTCGGGAAGAAACGGACTgaagggaaaaaagaaagagaaaaccgCACTGTGACTCCCGATGTGCAGTCCTTAAgattaacgtttttttttatattttatttcttccGCGAAGAAACCTCCAGTTTTTCTATTTTTCGAAAAGTAACGCGTCTACCTCAGTTTTAAGGATTTTTTTAACCAACCGTTGGCGTTTACAACCGTTTTCTCTGCCTGCAGGGCTTGTTTTGTACCCTTTTTTTTGCACTCGTCACAGCGACCCGTTGAGCGATGTCCAGCCAGTGTCTGCTGTCCCGCAGATGATCCATGACCACACCTCATTGATGCACTTCAGCACCTTTCCGACGCCTTCCCCCAGCCGTGAACCCCGCAGCTGATGACCAAAGTGCGTGCCACGCCTCTCCGCCGTCGCCCCGAGCCGCGCGCCTCCCCCCAGCCCCTCCCTCAGCCTCACGCCCCCGCGGGACGTCCAGGGATGTTCCAGAGGTTCGCCAGCGCTCTGTTCGGGGACGACGCGGAGGAGCTGAGTCGATGCGGCGGACCTGGAGACGGccgggaggaagaggaggaggaggacgacgaCGAAGAAGACTGGATCCTGGTCAACTACCTGGcTGAAGCCTGCTCGGCTCAGTGTGGCGACGGCCGCTCTGGATCCACCGTTGGTcctgaagaggaagaggaggaggaggaggaggaagacatgGTGATGGTCCCCTCCCCCATGGCCAGCCCCGCCATCCGCTACGCCTCCTGCATCTCCCTCAACTCCACGGCCGACACCGACCCGGACGGAGGggcggaggaggaagaggaggaggaggacgacgaCGAAGAGGACAACGGGGAAGAAGGGGACAGCGGCTTCCTCCGTCTGGACGCCGGCTCTCTGGAGGAGAGCTGGTTCGTCACGCCGCCGCCCTGCTTCACCGGCCGCGGCAGCCAGCCGGGCCTCCTGGAGACCAGCCCTCTGGAGAACCTGCTGATCGAGCACCCCAGCATGTCCGTCTACGCCCGCCACAGCACCCCGAGGCTCGCCCTCGACGCCCTGCCGCGCtccctggacctggacctggacctgggCTTGCTGCCTGAAGACGCGCCCGCCGCCCTGACGCCCTCCGCTGGGAAGGAGAAGGGCCGACGCCTTCTGGACGGCCCCCGTCACCGgccGGAGGTTGCGGTGGTCCAGCGGCGCTCCAGCCTCCACTCAGCCTGCTACGTTGCGGCGCTCTCCGCCCGCGCCGGCCTCCTGCAGCAGCGCTCGGGTAACGCCACCCAACGCACCCAGCCGCtgtcccgcaacgccctgcggCGCCTCAACCTGCTGCGCCCCCCGAAGGCCAGCACCAAGCACCTGCACCAGCCCAGCCAGAGACACCTCAACTACTGAGGCGTCCGGATcaccttcatcatcatcatcatcatcatcatcatcctcttcatcttcatcttcaacCTCCATCCTGTAAGCATTATGGGAAACTGACATTGGCCACCGCAAGAAATCCACACCAGCAACATGTCTTCAGCCATTAGTCACGCCCCGATCTGTTCTCACATCTGATTGGATGGTGAAATAGAGAAAGTGGCtggagatttttattttatcagctCATGTGGCCAGTGGGTGCAATGTTTCCccttttccttctcttcctccatccatccctccctccctccatcctccttCATATTGATGttgggaagaaaagaaaagatgttATCATGTGTCCCCCGacatgtcctcctcctcctatcaCCTTTGTTTTATTCTCCCTGCGCTGGACCAGTTTGCGTCCAgtcacagagaggaagagatttcacagtgttgtcctctctttctccttccctTTCTTATTCTCCTCTTCACCCATCCATCCTCCTTCATATtgatgttgaaaagaaaaagatttgtcatcatcatcatcatcatgtgtCCCCAAACATGTCCTCCTCCTATGATCCTTGTTTTACTCTCCCTCTATTGGACCGGTTTGCGTCCAatcacagagaggaagagatttCACGATGTTGTccatttctctttctccttctttctctctctttctctctctttacttgaTCTTCATGGACAACTTTTAATGTGTAGAATCAATGCTGTAGGTCACTTTACTCAGCGGCAGGTTCACAGCGTGGCAGGACGCTCGCTGTGATGTCACGGCATCTTAGCTGTGTTTTGCGACTTTTTTTGGGGCAACTTGACCGGACGCATCGGAGAGACCTTTCAGATCCCGAATCGCTCGACCATGAACAGTGCCGCAGCAGCACAACGGTGCCATTTAATCAGTGCAGCAGAGTTGTGATAGTGTTGCCCACAGAAAGTTGCCGGTAGTGAACGTGGTGCGCGCCAGTTATGAAAGTTATGAAAACAAGGAGTCTAAACTTTAAAGGAAAAAGTCCCCCTCGAATAACCCGACACTGTTATAGTCAGCAATCTGCGGAAGGGCTGAAACTAAGGATTATTTTCACTGTCGATTATTCTCTCGATTAGGTCTATAAAAGGTCACAAAATTATGAAAAACTAGAAGAAACTACaaaatatttccatttttaaaaagctggaatcagaatttttttgactttctttcccatttaaaaaaacattaatattatAGATTAATATTTGCAGCTCTAATCTGTAGCTGTTTTGGTCACTCTTCTGTCTTGCCTTGTTTATTTTTACTCAAGGCAGCGAGTTCCTACTTCCTACGTTTCCCAGGATGCATTGTACACAACTGCCACAAGAGAACCGGTCAATTAAAAGGACATTCACGTACTGATGATGAGGAGTACAACTCACAGTTGTATGTAGACgacacatttatttataacAGAAAATCAGTTACAAACTGGGCCTGTGGAGATTGAAAGACGTGGCTCTTTACCCAGGCACGGATTCTAGATTCTGtcaagttgcattatgggaaatgtagggtCCAGTGTTCTTGGAGTTTGAACCATAGACGTGACTCAAAGTTAGGATATCTCTGCCTCTGATGCTTCAATATCGGCCTTTTTAAAGTACCCTTGTACATATAAAAACTCTAAACCTTTTTTGTTTCCagcttttaaaatttttaagtTATTTAATTTCTTGCTCTAGTAGAAACTACCACCAGCAGTATGCAAAAAGACATTTACATTTGAATGCAAATGTTTTGGCAAAGTGAAACGTCACACTAACATTTAGCAttcagaggttttttttttttttttttttttttctgtgaaactGGAGGGTTTAGTTACCGAAAACCGAGAGACGGAACAGAGAGTTTCATGAGCCACTTCTGGCTCAAACCCCAACCTGTACTGTAGCTGCTTTGCCTTTCTGCTCTTGGTGGTCTAAACTGCATCTCATGgcccttaaattgcatccctgactcctccacttgcctcccttcctcgcgtcttagtcccaGGCACGGGAGAGACGGGAGGAAATCATgcgaggagagaggcaacgagaaaatgtgtttttagagggatgaggcgtcctttcctgagacggccttcaccgaggagggactgaacaacttccggttcagccgaggaccgaggagtcgaggagctatcgGATAAGGGCCGTGAGATGCAGCTCATGACGTAGATTTTTGATTATCCCTCGCTCCCGAAATCTGCGGGAAGTGACCTCATGATGTGACCTCGTTTATACGTAGCCGATGTTCACAGATATTCCGATATTCCAGTGTTTGTTTGGAGCATTTCGATGAGATTTTCTTCTTTAACTTTCCCCGTTTTTGTTAATTCGGCCATCTTGTCTCTCCGACGTCCTGCAGCATcaccttgttgttgttgttgttgttgttgttaaaagcGCTCGTCCTGCGGCCGCCTGGCTGAACCTGCCTCTGACTTTGTAATTCAGTAACTTTTcacaatattttctttttttttttattaaaatgagaaaaaaaaagactgtaaaAATTACTGGGTTAAATATCACTAAACGCCTTGTTTTAACGGTAGCTTTGAGAtaaatagaaaatgtaaaaagacaaaatgtatttaaaaaaaaaaaaaaaattccaaaatattttttgaaaagaaaaaaatgaaa

Function

GO: NA

KEGG:

id description
K15310 TP53INP1; tumor protein p53-inducible nuclear protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105101 lncRNA upstream 9595 35498360 ~ 35498738 (+) True G78607
TU105074 lncRNA upstream 114734 35393133 ~ 35393599 (+) True G78592
TU105070 lncRNA upstream 118450 35389515 ~ 35389883 (+) True G78588
TU105027 lncRNA upstream 151848 35356023 ~ 35356485 (+) True G78551
TU105019 lncRNA upstream 155518 35351591 ~ 35352815 (+) True G78549
TU105092 lncRNA downstream 466 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA downstream 466 35528475 ~ 35531724 (+) False G78603
TU105163 lncRNA downstream 47163 35575172 ~ 35577811 (+) True G78645
TU105172 lncRNA downstream 114897 35642906 ~ 35643353 (+) True G78653
TU105177 lncRNA downstream 120521 35648530 ~ 35691645 (+) False G78655
XM_039804887.1 mRNA upstream 18856 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA upstream 18856 35448568 ~ 35489477 (+) False nagpa
XM_039804894.1 mRNA upstream 145812 35357254 ~ 35362521 (+) True LOC120561699
XM_039806874.1 mRNA upstream 278021 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 306939 35188683 ~ 35201394 (+) True c7h8orf37
XM_039804890.1 mRNA downstream 7038 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA downstream 7235 35535244 ~ 35546748 (+) False ccne2
XM_039804892.1 mRNA downstream 7285 35535294 ~ 35546748 (+) False ccne2
XM_039805911.1 mRNA downstream 93751 35621760 ~ 35630081 (+) True LOC120562274
XM_039805912.1 mRNA downstream 93912 35621921 ~ 35630081 (+) False LOC120562274
TU105077 other upstream 99651 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 320134 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 651801 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 963954 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1472366 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 337833 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 609750 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 765978 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 864243 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 864243 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile