RNA id: XM_039804902.1


Basic Information

Item Value
RNA id XM_039804902.1
length 1709
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC120561705
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37826889 ~ 37845714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAAATGTCCTTAAAAGgttgtgGCTTCAACTTTTAAAAGAGCCATGTTCCCTGCACTGCTCGTCTTCTTCCTGCTGGCTGCAGAATCCATAGGTACTCTAGCGGAAGACAGCACCGGTCTGAACTTTATCGTTGCTTTTCCGGAGAACATTGCCAACTATTATCCTGGAGATCCCCAAAACAAAGTCCGAATCACGGCCATGAATGACAACACTCAGGTAACCCTGCAATGGTTTAACAACGCTCCCGGCGGTCCAGACACACTGAACAAAGGACAGACTCGGGAGTACCCAGTTGATGTAAAGATGGAGCTTCGGAAGACAGGGTTCTCCAACAAAACTCTCAAAATTACCAGCACAAAAAACATCACCGTCCAGGCCATCAACTGTAAAAAAACCAGCACGCAGACAGCTCTGGTTATGCCAACGGACCAACTGGGCACGAAGTACTTCATTCCTCCGATCCCCAACATCCAAGGAACGACTGTCCCTTCGGACATCGTCACGACAGATGTAACGGAAAGAGCTCCGTTCAAACTCGTTATTGTCAATACGGACAAAGTAAACCATGTAACCGTCGGAAATAACCAAACCATTGCCCTTCACCCCTACGAGCTCAGTCAGGTCTGGGTACGAGACAACGCATCGCGAACTGTGCAAGCCGACAATGCGGTTGCAGTTCTCTTCGGTCACACTTGCGCCATGAAGGACAACTGTACCTGCGGGCAGCTGTACGCCACGCTGCCGCCCGCCAACAACGAGATGTTGAAGTTCTACATTCCTCCCATTCTGGCCCAGAACGCTTCAGATAAAGCATTCGTACTTCTGTCGGAGAGAGGATCCAtcaccagagTACTGGCCTTCAACAAGGACTTGCAGCTGGTCGAGGCGGCCGGCACGGCCATCTTTTACCGTCCAGGCTTACTCCTCACTCTGATCCCAGAGACGGACTTCGGTAGCTGTTATGTCGTCAACACCGTACCTGATATGCAGACCTTCGCCCTGATCGTGGTCAACAAGAGTCTCACCGATGGGGTTCATAACGGGACGCTTCCTTTGCAGAATCCACGTTGGCAGGAGCTGAAAGGGACAGAGTACGTCTCGACACTTGTTGCTGTGGGGAATCAGAGCGTAATCTGGCACGCTTCCTCTAAAATGGCTGTCTACTTTTTGGGAAAGAAGGACAATGCTTGGTTTGGGAACCCAGCGCCCGTCATCAGTAAAACCCCAGATTTCAGGGGTTGCGTCTTGGCTCCAGAGGTCGTGAAAATCGCCGACGTGGCGGTCGGCTGGCGAGAATCCCTGAAGTACTGCAACGACAAGGGCCTGAACCTGATCAGCTTCCCCAAGGCCCAACTCCAGAGTCACATCTACGGAAAAATCCTCCAGCTCAATAATCACACGGTGCAGGAAGTGTGGATCGGCATGCGCCGGAGCTCCCGGACTGGCGAGTGGTACTGGCTGAATCAGGAACCGGTCAGCGCCACCAACTGGGATGAGGGGGAGCCCGGCACGATATTTGATGGCATGTGTGTTCTCATGAGTCTGGAAACGGGCAAGGACTTTGTCTGGAGTGGCAAGGACTGCTGTATGGCAGCTTATTCCATCTGCTACAAAGAACCCGTCTTGTTttggggttgagaccgagacaagagcgagactttgagggtttgagaccaagacaagaccgagactttgagggtttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106180 lncRNA upstream 27904 37795660 ~ 37799078 (+) False G79309
TU106181 lncRNA upstream 28419 37795660 ~ 37798563 (+) False G79309
TU106178 lncRNA upstream 30766 37795660 ~ 37796216 (+) False G79309
TU106172 lncRNA upstream 51646 37772240 ~ 37775336 (+) True G79305
TU106162 lncRNA upstream 66808 37759235 ~ 37760174 (+) True G79297
TU106194 lncRNA downstream 30021 37875735 ~ 37876077 (+) True G79317
TU106199 lncRNA downstream 97180 37942894 ~ 37943374 (+) True G79322
TU106218 lncRNA downstream 212393 38058107 ~ 38058421 (+) True G79337
TU106145 lncRNA downstream 217983 38063697 ~ 38123742 (+) False G79285
TU106149 lncRNA downstream 217983 38063697 ~ 38133859 (+) False G79285
XM_039806380.1 mRNA upstream 84516 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 106953 37717368 ~ 37720029 (+) True LOC120561575
XM_039806183.1 mRNA upstream 117021 37706105 ~ 37709961 (+) True LOC120562469
XM_039804927.1 mRNA upstream 240844 37583123 ~ 37586138 (+) True LOC120561715
XM_039806179.1 mRNA upstream 247127 37578597 ~ 37579855 (+) True LOC120562465
XM_039804778.1 mRNA downstream 33202 37878916 ~ 37888006 (+) True cmtm7
XM_039806188.1 mRNA downstream 210702 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 336521 38182235 ~ 38188763 (+) False LOC120562476
XM_039807006.1 mRNA downstream 411489 38257203 ~ 38259035 (+) True LOC120563002
XM_039806192.1 mRNA downstream 422563 38268277 ~ 38270068 (+) True LOC120562479
TU105717 other upstream 293913 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 293913 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 394303 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 898111 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1123117 36691393 ~ 36703865 (+) True LOC120562457
TU106195 other downstream 33250 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 210702 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 242262 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 324340 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 324340 38170054 ~ 38320429 (+) False G79351

Expression Profile