RNA id: XM_039804904.1


Basic Information

Item Value
RNA id XM_039804904.1
length 1065
RNA type mRNA
GC content 0.45
exon number 4
gene id cmtm8b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13211579 ~ 13215355 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGCGACAACCCGACTGAGAGCGCACAGACTGTGTGCATCAGTGCACCATGGAGAGAGCAGCTGTGGTGTCGAGCCGCAGGAGTCCCTCAGTACCAGAATGCaacatctccacctccaccttggCCTTCGACCAGCACTTCACCACAACTGCCAAAGGAATACTCCTCCTGGCTGAGATAgTTTTTGGTATGTTGGTGTGGATTCTGGTAGGGGGCACAGAGTATTTTCAtctgtctgctctctgctggGTGATGTTTGTTTCCATCTTGTGTTGGGTTCTGACAGTTTGCCTGTTTTTAATCTACCTCACTGGGACCCACAACAGGATACCACAGGTGCCCTGGACTACactgTCGCTGTGTTTGAACTGTAGTGCTGCAGCTGTGTATCTGGTGACAGCAGCAGTAGACGCTCACTCAGTCAACCAGGCCGTTAGGGGGCGACACAACTACAACTGCTGGGCAGCATCTACATTCTTTGCATTTCTGACCACACTGTGCTATGCAGGAAGCAGTTACCTGAGCTACTGGGCCTGGAAAACCACACAAGAACAATAGTCTCATTACTTGCTGTTTGAAGACAACAATGTTCACACTTTCTCTGAGGAATGGGCGTGATGGAGATCTAACTTCGGAGCAGGACAAGGCTAAAGTCAAATTTAAACTTGTAAGGAAACTGTTAATATGATCACAAGTCAGTCCACAAAACAGTGGAATCTGAGTTCAAATGTACAggcaaaaaatattttcagcatgTTGGAggttgtactgtactgtagcgtcacacacatgaatgagcagTCAGCCGTCTACAGTCCTGCACCCAGTAACTTTTTGTTTCATGTAAATCTCAATGAAGTTGGTCCCTGGTGTTGGAAAAAACAGGACACAcaaataagaacgaaagttgttttattaattttgtaCAATAGCCACAAGgtcttgagaaaaaaaaagtcaaactcgTACCTTGTCGCATCAGCAGTATTTAATATGGTTCAGATTGAACATTTCTACAACCATTAAAATTATGCAGAAATAAAAAATCACATTGTCATTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96504 lncRNA upstream 2549 13208828 ~ 13209034 (+) True G72242
TU96453 lncRNA upstream 86044 13124934 ~ 13125539 (+) False G72204
TU96447 lncRNA upstream 87056 13119637 ~ 13124527 (+) True G72199
TU96443 lncRNA upstream 91482 13112215 ~ 13120101 (+) False G72198
TU96524 lncRNA downstream 30363 13245718 ~ 13250107 (+) False hint3
XR_005639803.1 lncRNA downstream 230511 13445866 ~ 13448239 (+) True LOC120562636
TU96597 lncRNA downstream 256396 13471751 ~ 13473470 (+) True G72309
TU96603 lncRNA downstream 260015 13475370 ~ 13483111 (+) True G72314
TU96612 lncRNA downstream 316770 13532125 ~ 13533002 (+) True G72319
XM_039806749.1 mRNA upstream 111114 12998174 ~ 13100469 (+) False ulk4
XM_039804685.1 mRNA downstream 23759 13239114 ~ 13243225 (+) False LOC120561555
XM_039804684.1 mRNA downstream 23884 13239239 ~ 13243225 (+) False LOC120561555
XM_039804686.1 mRNA downstream 25112 13240467 ~ 13243225 (+) True LOC120561555
XM_039806596.1 mRNA downstream 30313 13245668 ~ 13250110 (+) True hint3
XM_039806592.1 mRNA downstream 37342 13252697 ~ 13264092 (+) False trmt11
TU96452 other upstream 85686 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 438144 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1502074 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1595341 11599037 ~ 11616242 (+) True G71896
TU96598 other downstream 252872 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 918256 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 960494 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1210439 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1411123 14626478 ~ 14630463 (+) False LOC120561718

Expression Profile