RNA id: XM_039804906.1


Basic Information

Item Value
RNA id XM_039804906.1
length 1611
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120561707
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14600889 ~ 14603683 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCACCATGGTGGTCATCAGTGGAATAAGTGAGAATCCAGAAGACTTACCAAAATCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCCTCCCAGAATACTACAGTGACTGTGACTACCCTGAGGGTGACTCCGGGAGGTGTGTGTATGAGCGTTATGGAGCCAATTTTATTCCCACCCTCTACGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTTGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGCGGTCCTTGGTATTTATAATATTGGTTTTTACAGTGGGATCTTTTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAGGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATGATCTTCCTCAAAGAGCAGCCTGATGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATCCCACAACTTCGAATGACGACACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGCTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCATTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGCCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCCTGCAGGCTGTGTCAGATGGTCAAAGTCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACCGACCACCAACCTGGGCAAGAGGAGCACTGCTGTGTGAAGTGTGTTCCATAGACGGTATAAAGATGCTGACCAGTTCCTTGCAGGACAAACACCAGTAAAAGAAGTGAAACAAATAGCTAAACATGGCtaattgcaacaacaaaaaagcaaagctTTTGCAAGTATTGTAAGTTTCAAAGCATCTGTAATAGCAGATTTGCACCTCACCTCAACCTAGAGAAAACCACAACATGATAGAAAGCGGAAGTATATGTTGTCAGTTTAATCTTTGCAGTCTCTGTGCACGAATTTGCATTTTGCTGTCAATTTTTGGAACTATCTCTGCAAAACTTCTAATGAAATTAATCAGcatttcaccaaaacaagtcatTTTCAAATCATTATACTCTATATTCTATCATGCAGACTGACTAGCCAAGTGGATATTATGCATACCATATCCTAACTACAACATCCTTGGTTTGATTCAAGtttacccccaccccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96863 lncRNA upstream 82992 14514667 ~ 14517897 (+) True G72520
TU96813 lncRNA upstream 230798 14368266 ~ 14370091 (+) False LOC120562174
TU96799 lncRNA upstream 437145 14163536 ~ 14163744 (+) True G72466
XR_005639660.1 lncRNA upstream 513093 14086603 ~ 14087796 (+) True LOC120561831
TU96714 lncRNA upstream 554840 14041888 ~ 14046049 (+) False LOC120561928
TU96909 lncRNA downstream 301 14603984 ~ 14604638 (+) True G72551
TU96919 lncRNA downstream 29397 14633080 ~ 14633375 (+) True G72559
TU96920 lncRNA downstream 30494 14634177 ~ 14635023 (+) True G72560
TU96921 lncRNA downstream 34187 14637870 ~ 14640768 (+) True G72561
TU96925 lncRNA downstream 40693 14644376 ~ 14645788 (+) True LOC120562067
XM_039804910.1 mRNA upstream 6905 14590243 ~ 14593984 (+) True si:cabz01093077.1
XM_039804909.1 mRNA upstream 6905 14590243 ~ 14593984 (+) False si:cabz01093077.1
XM_039804911.1 mRNA upstream 6905 14590243 ~ 14593984 (+) False si:cabz01093077.1
XM_039804907.1 mRNA upstream 6905 14592115 ~ 14593984 (+) False si:cabz01093077.1
XM_039804764.1 mRNA upstream 12437 14584813 ~ 14588452 (+) False LOC120561614
XM_039805273.1 mRNA downstream 269 14603952 ~ 14607904 (+) True LOC120561930
XM_039804766.1 mRNA downstream 8229 14611912 ~ 14619881 (+) True LOC120561617
XM_039804768.1 mRNA downstream 12734 14616417 ~ 14619881 (+) False LOC120561617
XM_039804767.1 mRNA downstream 13507 14617190 ~ 14619881 (+) False LOC120561617
XM_039804932.1 mRNA downstream 22795 14626478 ~ 14632721 (+) True LOC120561718
TU96848 other upstream 174709 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 424262 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 456593 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 1130439 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1474992 13124934 ~ 13125897 (+) True G72204
TU96917 other downstream 22795 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 422899 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 949781 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1414676 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2765020 17368703 ~ 17368775 (+) True trnar-acg_16

Expression Profile