RNA id: XM_039804924.1


Basic Information

Item Value
RNA id XM_039804924.1
length 5865
RNA type mRNA
GC content 0.48
exon number 33
gene id LOC120561713
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16995309 ~ 17065077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGAGACCGAACAGGAATACAGGCTTCTGTGATTTAGCAGAGTTTCAGTCCTCTGTGTGCCGACTGCCAACATGCAGTTCTGGGATTTCCTGGGCTGCACCAATGGAGATATATCCAGAATATCATACTACGCTGaATATGACGGCAAGTTAGCCCCAGCGGGAGCATCTGAATCGGGCATGGCGTCGTCTTCTTACTTGGAACCCAACCTCAATCACTCCGCAGTGGGTGGTTGTGGGGTTAAATCCAGGTCTGGGATGCCTGGTGGTACCGGTGTTGGTACAAGCGGCTCTGCTGGAGGCCTTGAGCGGCCCTCAGGCTCCATGGACCGGGTTCTGAAGATCTTCCATTATTTTGAGACAAACAGCGAACCGTGTACCTGGGCTAGTAATATCAGGCATGGAGATGCTACAGATGTCAGGGGTGTTATCCAAAAGATAGCAGAGATCCACAAATTGCGCTGTGTGTCCTCTCTGGGCCTCCGTCTGACCCATCTGCACTCTGATGCACTCCATTGGTTACACCCTGATTTGGGCGTGTGTCACATCAGGGAGAAATACGAGAAACAGCACCCCCAGGAGGAGTGGAGGTATGAGTTGCGGATGCGGTACCTTCCTAAAGGTTACCTCAGCCATTTCTCTGAAGACAAACCATCTCTTAACTACCTCTATCACCAGGTAAAGAGTGACTACATGCATCATATAGCTGATCAGGTGGATCAAGATGTTGCTCTGAAACTGGGCTGTTTGGAAATCAGGAGGTTCTTTAGAGAGATGCCAGGCAATGCCCTGGATAAGAAATCCAATTATGAACTACTAGAGAAAGACGTTGGTTTGAGAAGGTTCTTCCCCAAAAGCCTGCTGGACTCCCTCAAGGCGAAGACTCTTCGTAAGCAGATCCAGCAGACCTTCAAGCAGTTTGCTAACCTCAATGATGAGCAGAGCATCCACAAGTTCTTTGAGATACTCTCTCCCATCTACCGCTTTGACAAAGAGTGCTTCAAATGTGCTTTGGGGtCTAGTTGGGTAATATCAGTAGAGTTAGCTATTGGACCAGAAGAAGGAATCAGCTACCTCACAGATAAAGGCTCAATGCCTACACACTTAGCTAACTTTAACCAGGTTCAGTCCATCCAGTACTCTGCTTTGGAAGAGAAGGACAGGAAAGGCATGTTGCAGCTCAATGTAGCAGGAGCTCCAGagccccTCACAGTCACCACGGCATTGCTGACTACGGCAGAAAACATGGCTGACTTGATTGACGGCTACTGTCGGCTTGTCTCCTTAGCTACTCACTCCTTCATTGTCAGAGTCCATAAAGAGGGGGACAGAGCTCTGCCGTCCATCCCCAAAGTTTCAAATCATGAGAGGCGAATGGAAAAACGGATGGATGGAGTACGGACCCGCGCTGTTTGTGTCTCAGAAACAGACGACTATGCTGAGATCATAGATGAGGAGGACACATATACCATGCCTTCAACACGGGACTATGAGATTCAGCGAGATCGTATTGAGTTGGGACGCTGCATAGGTGAGGGTCAGTTTGGAGACGTCCACCAAGGAGTCTACATCAGCCCGGAGAACCCAGCCCTGTCTGTGGCAGTGAAGACGTGTAAGAACTCAACGTCAGACAGTGTCAGGGAAAAGTTTCTCCAAGAAGcacTGACCATGCGTCAGTTTGACCACCCTCACATTGTGAAGCTGATGGGAGTCATCACAGATAATCCAGTCTGGATCATCATGGAGCTCTGCACACTCGGAGAGCTACGGTCATTTCTCCAGGTGAGGAAGTACAGTCTTGACTTGGCCAGTCTCATCTTGTACTCATACCAGCTCAGCACGGCACTGGCTTATCTGGAGAGCAAGCGCTTTGTACACAGGGACATCGCAGCGCGGAACGTGTTGGTGTCTACAGTCGACTGTGTAAAACTTGGGGACTTTGGTTTGTCTCGATACATGGAAGATAGCTCTTATTATAAAGcttctaAAGGTAAACTGCCTATTAAGTGGATGGCTCCAGAATCAATCAACTTCAGACGGTTTACCACAGCCAGTGACGTCTGGATGTTTGGCGTCTGTATGTGGGAGATCCTAATGTTCGGCATTAAGCCTTTCCAAGGTGTGAAGAACAACGACGTCATCGGCAGGATAGAGAACGGCGAGCGACTGGCAATGCCCCCTCAATGCCCTCCTACTCTCTACAGCTTGATGACAAAGTGTTGGTCGTATGATCCCAGCAAGAGGCCACGCTTCACGGAGCTCAAAACACAACTGAGCACTATATTAGAGGAGGAGAAGCTCCAGCAGAAGGAGAGGAGCAGGATGGAGATGAGGAGACAGGTCACTGTTTCTTGGGACTCTGGAGGGACTGATGAAGCACCACCAAAACCTAGTAGACCAGGCTATCCCAGTCCTCGCTCGAGTGAAGGCTTTTATCCCAGTCCCCAACATCCTGGACACTACCAGATGGCAGGGTACCCAGGCCCTCACACCCTCCCCTCGGTGCCCAGCGCCCTGTACCCCCCACCGGCTGCAATGCTGGACACACaccacgcgcacacacaccccCGCCACCACgtccacacacactcgcacgcgCAGCACCTCCCCCATCCACATGGGCACGACATGGCACTATGGGGCTCTGCGATGGAGgaCAGGGCAGTAGACATGCAGCAGTGTGTAGGCCAGCAGTGCCTGTTAATGGAGGAACAGCTGATGATACAACAACAGCAGATGGAGGAGGACCAGAGGTGGCTGGAGCAGGAGGAAAGGCTGCTGaaaCCAGACTCTAGAAGTTCTAGAGGGAGTCTGGACAGAGAAGACGGTGGACTCCAACCACCGACAGGAAACCAGCACATATACCAGCCCGTGGGCAAGCCAGAGCATGCAGCTCCCCCAAAGAAACCCCCTCGACCTGGGGCCCAGAGCCAAGTGGGCAGTCTGGCCTGTCTGAACACTGGAGATAGTTACAACGATGGAGTCaagCTGCAGCCCCAAGAGATAAGCCCGCCCCCCACCGCCAATCTGGATCGCTCCAACGACAAGGTGTACGAGAACGTGACCGGATTGGTCAAAGCTGTGATTGAGATGTCGAGCAAGATTCAGCCAGCTCCTCCAGAGGAATACGTTCCCATGGTCAAGgaTGTGGGTCTGGCATTGAGGACATTATTGGCCACAGTGGATGAGACTCTACCACAACTTCCAGCCAGTACACACAGAGAGATCGAGATGGCACAGAAACTTCTGAACTCTGACTTGGCAGAGCTGATTGGGAAGATGAAGTTAGCCCAACAATACGTGATGACCAGTCTCCAGCAGGACTATAAGAAGCAGATGTTGACAGCGGCTCACGCTCTTGCAGTTGATGCCAAGAACCTGTTAGATGTCATCGACCAATCACGGCTCAAGATGATGTCCCAGTCCCGCCCGCACTAGCCCCACGACAGCTGAGCTGACCAACAGGAACTGGTCTGTTATTTGAGAGACAGCATCATTCTGGATACTGTGGATAAAAGTGACGTCATGATATATGAGAGTTATCGGAGCTGACTGCTTTATATCAAAGGAGCAAACCGCAGCTCTGCTACTTTGACAACAGTCCGTGAAGAATCATTAGATGTTGAATCCTGTGTAAGCTGAGGTCGCCTCTCCACCACTGTGACTTTTCGTAATACAAGAGCAGAGCAAAAACACTTTCTGAATCAGGGACTTGGCAGCTTCACCCTCTTTGGACTGTAATATAATGATGAGAGGAGGGAAagcgaagaggaggaggaggaggagtgatgATTTTCAAACTGTGGGTCAGGACCCGAGAGGATCATTGGGTCCTAGACTTAAAAGGTTTAGAAACCTCCAACAGAAACACTATCATGGGAGCAATTGGATCTGGAACTGTTGCCATCGGGTGGATTACTCTTTTTAAGCATAGCCATCAGAACCTGATCATACTGCGTTTGATCTGCAACATACCTGCATGAAACCTCACCGTAGGAATGGACTGAGATGTCAGCCAGCAGCCATGTCAGTTGTTGATATCGTGTGTTGTGAGCCCCAGGATGTGAACGTTCTCCTCTGCTGAATACCTCCACATCACCATGGATTCTTTTAAATTGGCAGATGAAACCACATGGTATCCTATTCAGCTCTGGTCAAATGTGGTGCTTCAACAAGGGACGTTCACAGTAAAGAGAAGCAGCGTCCCATCACTCTTCCCATTTCTCCTTTTCCATTCATTCCCGTTCTCCCTCCGTCTCACCAGGTTTTATTTATAGACTCAGAAATTGCAGAGGAGGAGACGGAGGGAGAGACGGGTATTAAAACTTGAGGACAGTCTAGCGCCGGTCTGCTGCCTGAAGAATGAACACACTTTTCTCGTCTCTTCactgactcactcactcactttgttttccttttgttcTCACTGTTCGTCTCCTTCTTGACGTCTTCCTCAGCTCTTCTCTGAGCCGGTTTTAAAGACTCCAAATGTGAAGAATCCAACTCTGTCTGGGTAAACACCGCAGATAGGAAACTCCCTACTCGCACtcaatttactttttttatcgGCTGGCTccatgttttttgtgttgtttcagCAGTCACAATCTTCTTCCTCTTTACTGAAAACTGTTTGTAACTTGGAATACAAGCAAATATTCAATCCCAgcattgacaaaaaaaacaaacagaaggtACATTTTGAGAATTCAGTCGGGGTGACTGGACGCTCCTATTTGTCccagaggaagagagaacaTCATGTCTCAGACTGGTCACTGAGCTTGACTGAAGCATTTCTGTGAGGACAgtgtctcctctctcccttGTTTTTCCTCACCTACAGTCCCAATATCGTGAAGTTGTTCCTAATACGGTAAAATGGTGCCACACCTTTAACTGTCACCCAGCGGTGTCTTAAAGTGAATTTACTGGGGACACAAACCTCACAACTGGAACCTCTGTGCTTTGAGTCTCAGTTTCTGTCAGGTGTAACTCTTTAAATGTGTCCCTCCTAGCAACAGTCCCcagggaaacaaacaaacaaacacacacacacacacacacacatgaaatgtGGAGCCACATGAGTGGAACTTGTCTTGCAGACACAAAACACTGAACTGAAAATACAGCAGATCACACGTGTCTTTGTTAATAGTGACCCCCACATGACATACTGCTATATGAAATATACTGGTGGTTGTTCTAGTATAGCATGATATACTGGTATGGAAAAGAGCATATTTGCACAGCACCAAATTAAAAAtcgtaacttttttttaaccctatTTTACCCAGACTTGATTTCCAGGTTTAGCCAGCAACGAAACTCTCAAATATCTGGGTTTTttagggataaaaaaaaaaaagttgggaaaaaaaaacaatctattTTATCGTTGCGTAAATCTGCTCATGTTAGTATATTGTAAGTTATACTGGTGTGAATCACTGGTGAATTGTACATAAGTAGTACTAGTAAACActggtttttattttgtcttctgGGCTAAATCAGCCATCTTGTCAAataggaggagaaaaaaaaatcaatgaaataaaaatgatgaaATGGAAATTAGATTGTCCACATTCTTATCTATGATAGAGATTTATTTGAAAGCATTTCATTTCAGGTTTTATATCTCAAGAATCAAGCTACAGAGTTTGTATTTAATGTTGTAGAAAACAAGCAGAAAAACGCCAAAATTTGAAAGTAGAGGGAGACTTCTTCCTGCagccctccctctcccctctctgtcacCTGGGCATATGCATGtacagaacagccaataggaacgctcTCTCTTTCTAAAATGACCTGAACAACTGCAAAAATAAATGACCTACCACTGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97344 lncRNA upstream 3320 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 32469 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 264265 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 500734 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 504928 16489593 ~ 16490381 (+) True G72798
TU97325 lncRNA downstream 512 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 327191 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 362751 17427828 ~ 17463027 (+) True G73027
XR_005639682.1 lncRNA downstream 435512 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 858873 17923950 ~ 17926628 (+) True G73186
XM_039804925.1 mRNA upstream 4712 16984611 ~ 16990597 (+) True LOC120561714
XM_039805708.1 mRNA upstream 97344 16858023 ~ 16897965 (+) True sntb1
XM_039805707.1 mRNA upstream 145077 16845953 ~ 16850232 (+) True LOC120562165
XM_039807231.1 mRNA upstream 164146 16816442 ~ 16831163 (+) True LOC120563118
XM_039805982.1 mRNA upstream 182556 16732633 ~ 16812753 (+) False LOC120562315
XM_039806226.1 mRNA downstream 14330 17079407 ~ 17093876 (+) True mrs2
XM_039806228.1 mRNA downstream 14330 17079407 ~ 17093876 (+) False mrs2
XM_039806429.1 mRNA downstream 29979 17095056 ~ 17107677 (+) True LOC120562623
XM_039806667.1 mRNA downstream 44799 17109876 ~ 17129613 (+) True LOC120562784
XM_039806669.1 mRNA downstream 44799 17109876 ~ 17129084 (+) False LOC120562784
TU97163 other upstream 923108 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1439357 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1968656 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2364846 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2569129 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 303626 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 384508 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 391566 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 580436 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 685879 17750956 ~ 17779130 (+) False paqr7b

Expression Profile