RNA id: XM_039804925.1


Basic Information

Item Value
RNA id XM_039804925.1
length 2042
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120561714
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16984611 ~ 16990597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCAAACTAATAGCCTGTCAGACGCATAAAACACTGTTGCTCTGAGGTCGTCATTACTGCAGGACTGgcctaaaaatacaaataaggaGAACAATATTTGCTGCAAAAGAAAAGAGGGGTTTAAGAAACAAAGATCTACGCAGGAACTCTGCATCTACTGCACATCTCCTTTAGCCTACCTCCGTTGTGGTTTACTCTGCATCAATAGCCATGGAAGTGGACGACAATGAGTGTGAATATGTATTTGAGCCCCACATCACTGAGGAGCACATAGAGACTCACTATGGAAATGTCCACTGCATCATGGTAGGAACTCCGAGGGCAAACCACCCTGTCCTCCTGACATTTCATGATGTTGGACTGAACCACAAGTCCTGTTTTGACACACTGTTCAACCACGAGGACATGCGGGAAATCAACAGCTATTTGCCTGTTGTCCACGTTGAAGCACCAGGACAACATGAGGGAGCCAAAACTCTGCCTTCTTCATATATTTACCCTTCCATGGACCAGCTATCTGAAGCACTGCCCGCTGTCCTCAAACACTTTGGGTTGCGTAGAGTTATTGGACTTGGAGTTGGAGCTGGAGCCTACATCCTGGCTAAGTTCGCTctgAATCACCCAGATCTGGTGGACGGATTGGTTTTGATCAACATCAACCCCAGCGCTGAAGGATTAATTGATTCTGTTGCAAGCAAGctCACCGAATGGACCCACACTCTCCCGGACACGGTCATCGCACATTTGTTTGGAAAGGATGAGATCGAGAACAACCATGACCTCATAGCTACTTACCGTCACAACATCACAACAACGATGAATCAGTCCAACTTGACTCAGTTTCTCCACTCCTACAACAACCGCAACGCTCTGGAGGTGGAGAGGCCTATTCCTGGAGAAAACATCAATTTCAGGACCCTCAAGTGCTCCACCCTGCTGATCGTAGGAGATAATTCTCCAGCTGTGGAGGCCGTGGTCGACTGCAACTCTAAACTCAACCCCACCGAGACCACTCTGCTCAAGATGGcggactgtggaggacttccTCAGGTTGATCAGCCAGCCAAAGTGATTGAAGCCTTGAAATATTTCATCCAGGGCTTGGGATACTTGTCCAGTGTCAGCATGACCAGACTTCGGTCACGGACGACCTCCAGCTCCAGCATCACGTCCATGGATGGCCCTCGGAGCCGCGCACACACCAACGAGCTGCAGCATGAACATACACACTCACGCGGCACCGAAGAGAAGCGCGGGCGCTCACACACTGACACCCCAATGGAGAGTATGTCCAAAAGTAATGTGGACCACATTGTCTCAAAGTCCAGTGAAGTGGCATGCTAGAGCGCATTCTGCACTACATCGCATGCGCTTAAATCAAATCATACCTCATTGTATCTACTCAGACAGCTTCCCACTGTCATGCCCTGTCATCTGCACTATCTCTAGCTGAAAGGTCACAGGTCATATGTGACTTTGCTCTATGTAAACTCTGTCTCCCTATTCCTTCATCAATTTAACCATCCTTTCCTGCGTCTTTCTCTTGGCATCATTCCTAGTTTCTCTATCCAActgctctcctcctctctgaacTGTTACTGTATGTCATCCTTCTTtactacatgtttttttttccctcactgTCCCTATTCATGTCCTTGTCTACTTTCAAACTGAAATGTATTCTTTGAAAATCATGTGTTTATGTAATacacaaatgcatattaatgtataAGGAATGTCAATACAATGTAAAGACAGTATAAAAAGTGCAAAAGTGTAAAAACTGTATGCTCATAACTGTAGgaacatgtatttattattcaCAACTGTGACAGCTGTGTGTTATTAACTGTAGGTATGTTTTATAGACATACTTTTTAgattcaaaaatgttttatatttggaCTTGCATTGGGAATTCTGTGTAATTATTACTATAAAGACACGTTACAGTAAATTCAACTCAATTAAAACAGAGGACTTCATGTAAGTAGCTCTTGTGCTATCAGTGATTAaactttttactgtaaataatcA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97321 lncRNA upstream 21771 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 253567 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 490036 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 494230 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 498692 16485713 ~ 16485919 (+) True G72797
TU97344 lncRNA downstream 1119 16991716 ~ 16991989 (+) True G72879
TU97325 lncRNA downstream 74992 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 401671 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 437231 17427828 ~ 17463027 (+) True G73027
XR_005639682.1 lncRNA downstream 509992 17500589 ~ 17504921 (+) True LOC120562054
XM_039805708.1 mRNA upstream 86646 16858023 ~ 16897965 (+) True sntb1
XM_039805707.1 mRNA upstream 134379 16845953 ~ 16850232 (+) True LOC120562165
XM_039807231.1 mRNA upstream 153448 16816442 ~ 16831163 (+) True LOC120563118
XM_039805981.1 mRNA upstream 171858 16732633 ~ 16812753 (+) False LOC120562315
XM_039804920.1 mRNA downstream 4712 16995309 ~ 17065077 (+) True LOC120561713
XM_039804921.1 mRNA downstream 4712 16995309 ~ 17065077 (+) False LOC120561713
XM_039804923.1 mRNA downstream 4712 16995309 ~ 17065077 (+) False LOC120561713
XM_039804922.1 mRNA downstream 4712 16995309 ~ 17065077 (+) False LOC120561713
XM_039804924.1 mRNA downstream 4712 16995309 ~ 17065077 (+) False LOC120561713
TU97163 other upstream 912410 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1428659 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1957958 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2354148 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2558431 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 378106 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 458988 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 466046 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 654916 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 760359 17750956 ~ 17779130 (+) False paqr7b

Expression Profile