RNA id: XR_005639638.1


Basic Information

Item Value
RNA id XR_005639638.1
length 2630
RNA type transcript
GC content 0.50
exon number 9
gene id LOC120561717
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32405133 ~ 32421472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTGCCTCACTTTACATTTGCCATGTCGCCGCCATCTTTGACccacaaataataaaaacacaaatgataTTTTTGGCGAAGAAGTTCCGAAACCGTTACAATACGCTAACGTATACCAGAAACCAGCGTAAATAatagatcctttttttttgacaCCTTCATTTTGAGATGTCACTGGTGCATCTTGGGCAGCAGCTGCTGGAGGCGGTGCGGAGTGGACAGGATGATGATGTCAAAGCTCTGATGGCCAATGGTGCTCCGTTCACCACGGACTGGCTGGGCTCATCGCCGCTGCATTTCGCAGCCCAGTACGGTCATCATTCCACCGCCGAGGTGCTGCTGCGTGCCGGGGTCAGCAGGGACGCCCGAACAAAGGTGGACAAGACGCCTCTTCACATCGCCGCCTCAGAGGGTCACTCCACCATAGTGGACCTGTTAGCGCAGAACGGCGCCAACATCAACGCCAAAGACATGCTGAAGATGACTGCGCTGCACTGGGCGGCTCAGCACGGCCACAGGGAGGTGGCGGAGCTCCTGCTGAGGCACGGCGCAGACGTCCACTGCCTCAGCAAGTTTGACAAGACGCCCTTCGACATCGCCATGGATACCAGCAACACGGAGCTGATGATACTGCTACAGGACGGCATGCAGAACCAGGTAAACATGGACCCAGAGTCCCACTACATCATCCGTGCTGGTGGGCTGGTCAACCTCTCAGACCTGGTCACCACCACCAAAACCAGTGCAGGCAAGTCAGAGGACGTCATGGCTGCCGAGTCGGTGGAAGCAACCTTTCAGCATGTGGTGGGCGACGGCGGGCAAAGGGTCATTACCATAGTGACGGACCAACACGGCAACCTGCAGCCAGCGTCCCTGGGCCAGCAGTACATCTTCACCCTGCAGGGGCAGCAGATGGTGGCTTTGCCAGCCGGCACAATCACAGAGGAGGTGGTGGTCGAGGATCCTCAGCAGGCCACGCTGAAACGCAAGAGAAACACAGACCCCTCGGCCAATCACGTCGGCCAAAAAGACAAGaaGGTGAAAGAGAGTCGAGAGCAGCTGCAGCGGCAGCTGCAGGAAGCCAATCTCAAAGCCGAGGGGTACCAGCAGCAGCTCCTACAGAAGGAGCAGGAGGCCGAGCAGTATCGCCTTAAACTGGAGCAGGCCATAGCAACCAGTAACAGCAGCATCAGCAACACCATCACTGCGACGACCGTTACCTTAAACAACGGCGCTACAGtgaagcagcaggaggaggaggaggaggaggaggaggaggaggagatgatgGTAGAGGAGCAGCTAGAGACGACACAGGAAGCCGCAACAAAAGAAGTGGAAGAAGGGGAGAGGGAAAACATGGAGGAGGGGGAAGAGGTCATCTTCCTTCCAGAAGATGCGATTCTTGTGAACGAGCGCGAGCTGGAAGTGGAGGTCGATGGTACAGAGGAAACACATAAGTCTCCCCCCCGTCAGCGAGGCCAAGGTAGAAGGAGAGGCAGAGGTGGACGCAGACACTAGCTGACATGTTTTGCGATCATCTATTTAACTGATTTTATAACCTTTTGTAAACAAAGACTTTTGTAAATATGTCCAGGTTTTCGTGCGGCACAAACATCAAGAGGACTTTAGCTTTACATGACTCTATAGACCATTTCACAGCTGTAAACATTAACATTCTAAATGGCCCCGGTGGTAATGTACCGTATGTGAATGACATCAACTGACAGGAAGTCAGCAAGAGGCcaggctgttgcctagcaatggGATTCCATTAAAAAAGGTCTATAGGACTTTACATCAGGCACACACTGAGCCTGGAGAGGACATGGTTGGTGTCATGGACTTTGGATGATGTTCAGTTCTTCACTACTTTATCTCTTTGTGTTCCATAGCTCTGGGATCACCTGTAATTTCGTGACCAGCCTCCCAACTGAATGGTAGCTGAGCTAGgATTTGTGTCGAGGGCGCTCAGGCTGTGATGTGTCACTCGGTGAACGGGCCTCAGTGGAGGCGCACAGTACAGTCAAAGATAATCAAGAAGCAATTACAGTGAGAGCACTCGGTGATCTCTTATCCAGGGTGACCTGCAGCGAGCAGATAGGAGCTTCAACAGAATGCACCGCAGTTGATGGGAATCAAACCTGTGACCGCTTTATTTTTAGAGCAGCGTCTTTAGCCACTCAGCCACCGTCCACCCAGTTATTTTACTGCGTAATATTATTGATTTAATACGAGTAACGACAAGATGTAAAATTACGTTTTAATGTTAATTCTTTGTCTACGTGACGGTTTTCACACACGTCTGTTGGGAGATGTTCATGACCAAAATCATGAGTGCAGGGATAAGGATGGTTTAACTTTAAACGAGGCAGCATTAGGGCCATTTCCCACAAGGACAAATTACAGAGCCAGTTTGGGGATTTtgaatttgatttttttcatcaATTCACAGCCCATCTTCTCATTATTGAAACTGTCGGGGGACGTTTGTTTACATGTTTGCACTTCAGGGCTTTATTCATCAGAACTTCTTATTTTTTGACACAACAAGTTTGTAAAACGTAATTATGTGAttctttttgtgtctgttttttgtcaCTGAGGCAATAAAGTGTGtacttattaa

Function

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103989 lncRNA upstream 28220 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 36055 32360545 ~ 32369078 (+) True G77764
TU103984 lncRNA upstream 109813 32295095 ~ 32295320 (+) True G77757
TU103929 lncRNA upstream 264990 32138777 ~ 32140143 (+) True G77722
TU103887 lncRNA upstream 414763 31989886 ~ 31990370 (+) True G77687
TU104008 lncRNA downstream 31715 32453187 ~ 32453410 (+) True G77776
TU104096 lncRNA downstream 344799 32766271 ~ 32766508 (+) True G77862
TU104101 lncRNA downstream 399771 32821243 ~ 32821488 (+) True G77867
TU104133 lncRNA downstream 506862 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA downstream 530505 32951977 ~ 32952703 (+) True LOC120563080
XM_039805906.1 mRNA upstream 30946 32315022 ~ 32374187 (+) False LOC120562270
XM_039805905.1 mRNA upstream 30946 32318207 ~ 32374187 (+) True LOC120562270
XM_039805907.1 mRNA upstream 90220 32309084 ~ 32314913 (+) True elp6
XM_039806026.1 mRNA upstream 111431 32229003 ~ 32293702 (+) False cspg5a
XM_039806024.1 mRNA upstream 111431 32229004 ~ 32293702 (+) False cspg5a
XM_039805766.1 mRNA downstream 431885 32853357 ~ 32888350 (+) False LOC120562193
XM_039805768.1 mRNA downstream 447623 32869095 ~ 32888350 (+) True LOC120562193
XM_039805769.1 mRNA downstream 447632 32869104 ~ 32888350 (+) False LOC120562193
XM_039805774.1 mRNA downstream 471059 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039805775.1 mRNA downstream 471069 32892541 ~ 32900329 (+) False tnfaip8l2b
TU103881 other upstream 425224 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1268987 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2280495 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2992720 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 3015241 29384135 ~ 29389892 (+) True LOC120562177
TU104140 other downstream 678941 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1204459 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1209567 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 1210170 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 1417604 33839076 ~ 33861112 (+) False bmper

Expression Profile