RNA id: XM_039804939.1


Basic Information

Item Value
RNA id XM_039804939.1
length 1973
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120561723
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8083900 ~ 8089659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAGTGTCAGTCGCTCTCTCACACAGTAGTTAGAGAAGATGGAGAAGTTTAAGATGGTTCTGGACATCGCTACCAAGCAGAACAGCCTCGGGTTCGGGGCGGTCGCCCTGGTGACAGCGGGCGGGGAGCAGTTCTTCTCCGTGGCGATGTTCTCTTGTCCCTGCAATGACCTGAACTTCGTCTACGGCATGGTGTTCCTGCTGGTGCCCGCCCTGGCTCTCCTGCTGCTGGGTTACATCCTGAGTAAGAAGACGTGGAAGACGCTGACGGGTGTGTGCCAGCGCCGGGCCGCGCTGTGCCGCTGGAGGAGACTGACCGTCATCTGCACGGCCCTCTTCCAGGTGAGCAGCACCGCGCTGGTGGCGCCTGCCAGCTGGATCGCTGTGGCTCTGATCAACGGGAAATTCTATGAGTGTGCGATGACCGGGACCAATGTGACCGCTTACAACAAGTACCTGTGTGGAGAGAAGGGCTCCCGGCTCCAGTGTCAGCAGGAGCTGTACAGGCTGCCCTGCGGGACAGGCATCAGTGTCCCGCAGCTGGACAGGCAGGATGTCCTGCTCACCCTGAAAGCTCAGTCTCAGGTTCTGGGTTGGCTGCTCGTCGCCTCTATCATGTTGTCCAGTCTGCTGCTGACCTGTGTGGCTCGGTGCACCTCCCCCATCAGTTACCTGCAGATCCGCTTTTGGAGAGACTATGTCCATGAAGAGAGCAGCCTGATGGATTCATATACCACCAAACACGCCAAACAGCTCGCTGAGAGGAACGTGAAGAGCTTCTTCAACAAGACACCGTCCGAAGAAATCATCACCCCTTCCAACAAGGACTGGGAGAAGATCTCCTCCCTCTACACGTTCAGCACCAAAGACAACTACTACAGCACCTTGCACCGGGCGGTGGAGGACTGTCAGGAGGTCGACAACGGGATGATAAGGTTGACTTCGGTCAAGTCAAATGAGCCTGTTGACCCCAACCCTTTGGTTCTTGGTTTTTATGATGGCTCGGTGTGACAAGATTTTTCAGCATCAAAGGATGTCTGAGTTAGGGTTAGAGCAGTTTGCTGATACATGAATTATAGAGTGAAGTGTTCATAGTGCAGGTCTGGCTCTGAGGAGTTCATCCAGAGAGCCTAGGGGGGGCAGCAGGCTACTTGGTCAAAATCCAAAGCATACCGACACATTATAACGCAACGCCGCCCCCTGCTGTCATGGACACAAATACAAGACAGGGTTTAATCAGTAACTGGAAAAGAGCTTTTTGGATCATGTGAATTATGGAAGTTTTTAGACCTCTTTATTCAAATGGCAAAGCATTTAGCATTTGACAACGTCTCCAATTTTCAAATGCAATTTGAATATCACAACACATTAAACACGGTTCAATAACAGTTTTTCCCTGCCACAGTCAGACTGatggcaaaaacaaaataaaacactgaacaATTCACTGTGATTAAATGTGCAATACTCCTCACTACTACACTCTACTGTGAAATACCACTGTGCAGTATTTGCAATATTTATTTCATGACAAATGCGATACCCCCCATAGTTGTCACAGACCCATTACCCTTAGGACAGTGTTTATAacctgtatatatgtattattgCTACTCTAACAGTCCTTCTTTTTGGTATGTTTACAAGCTCCTGGTTTACAGTAGTACTGACACTCCACTTACAGTATTCATAATTTATCATATTTTTGTGCAGTCTTTTGTAtcatatttaagttttttttatcttattttatttacattgtgtaatctttgtgttttaatttgtgtgcttttctttgcccttaactctttttttactttactttttactttttactcaaAGAGCCTGCACAAGAATCCCTATGTGCCTGGACTGTTTGGTGTATGCACAAATGGCAAATACAAATCTTGAatatgcatttttcatttgacaATTTAACatgcaaacattttaaataaaaaaataaaaacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95261 lncRNA upstream 14776 8068055 ~ 8069124 (+) True G71220
TU95239 lncRNA upstream 23099 8060110 ~ 8060801 (+) True G71201
TU95252 lncRNA upstream 24095 8049035 ~ 8059805 (+) True G71211
TU95236 lncRNA upstream 36231 8046950 ~ 8047669 (+) True G71200
TU95237 lncRNA upstream 36314 8046950 ~ 8047586 (+) False G71200
TU95269 lncRNA downstream 13625 8103284 ~ 8111425 (+) False G71226
TU95270 lncRNA downstream 20227 8109886 ~ 8111425 (+) True G71226
TU95374 lncRNA downstream 38040 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA downstream 42590 8132249 ~ 8132787 (+) True G71305
TU95391 lncRNA downstream 109294 8198953 ~ 8199908 (+) True G71323
XM_039804937.1 mRNA upstream 24484 8048460 ~ 8059416 (+) True tcaim
XM_039806873.1 mRNA upstream 37222 8029682 ~ 8046678 (+) True gpd1l
XM_039807228.1 mRNA upstream 179325 7885697 ~ 7904575 (+) True LOC120563115
XM_039805059.1 mRNA upstream 300418 7767759 ~ 7783482 (+) False rbm42
XM_039805058.1 mRNA upstream 300418 7769790 ~ 7783482 (+) True rbm42
XM_039804938.1 mRNA downstream 1993 8091652 ~ 8096292 (+) True LOC120561722
XM_039804940.1 mRNA downstream 6702 8096361 ~ 8104392 (+) True LOC120561724
XM_039805231.1 mRNA downstream 14590 8104249 ~ 8104849 (+) True LOC120561897
XM_039804941.1 mRNA downstream 15205 8104864 ~ 8109365 (+) True LOC120561725
XM_039805973.1 mRNA downstream 24862 8114521 ~ 8121326 (+) True rwdd1
TU95170 other upstream 282520 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2123046 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2490851 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2665979 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3417794 4665784 ~ 4666106 (+) True G70654
TU95377 other downstream 31942 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 193722 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 193722 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 659284 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 720692 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile