RNA id: XM_039804940.1


Basic Information

Item Value
RNA id XM_039804940.1
length 1467
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC120561724
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8096361 ~ 8104392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTTGCAAGGACACAGACTCACAGTCATTAAAAAACTAGACCAGCAGGTTTTTTGTAATTGGACAGGAAGCATGTAAAGAGGGATGTACATGAAAACAGAGAAAGGGAAGTAAAGTGCAACTGTGCCTATCTCTTTAGTGGCAGCGCAGTGGGGACTTCCCTTTGCAGGAGATCAAGAGGCTCTGGGCGGGCCGGAAGGAGCGCCGGACCAACTGAAGGAGGAGTCTGAAGAGAACCAGTGCCAGCCGAAGGGAGTGGCTCAAACAGGCTTGGcagatttgttttgtcttcAGCTGTGAAAGAACACAGGAGAACAGGGATCTGTCTTTCACTTTGGTCAATTTCTTGTGGAGTGTGTCTGAAACCTCCCCGCTGATGCCATGGATAACATCCAGACTGTCCTGCGTTTCTTCATGAACCAGAAATCCACCATTGGCTACAGCTTCATGGCTCTCATGACTGTAGGTGGGGAGCGAGTCTTCACCCTGGTTTCCTTTCAGTGCCCGTGCAACCACGACCAGAACTTTGCCTACGGGCTGACCTTCCTGCTGGGCCCGGCTGCAGTGCTGCTGGTTTTGGGTCTCTTGTTCACCAGCAGGCTGTGGAGGCTCTACACTGGTTGCTGCCTCAACCCCATGAAGCTGTGCCCCCGTGGGAACTGCTTGGGCCACCTCCGGGTGTTGATGAGCATTTTCTGTGGAGCTTGCGTGGCTCCTGTAATGTGGCTCTCCGTGGCCCTGCTCAATGGGACCTTCTATGAGTGTGCGGTCAGTGGTCTGGATGATAACCTGGTGGTGGACCTGTTCTGTAAAAACAAGACATTGGCGTGTCGGGAGGAGCTGGCCCGAGTGCCCTGTGATCGCTCCAAACTGTCCACCGATGAGCGCATGGAGCTGCTGCTCATGTTCAGGGCCCAGTCCCAGATCCTGGGCTGGTGTGTGATCATCACCGCTGTCGTCGGGGGCCTCCTGGGTACCTGCTACAAAAACTGCCGCTCCAAAGTCAGCTTCCTGCAGCTCACCTTCTGGAAACGCTACATGGAAAAAGAGAAGGAGCGCTTTGATACTCTCGCTGTGGAATACGCCACCAAACTGGCCGACAGAAACCTGCAGAGCTTCTTTGAGAACAAGGAGCCTGCTCCGTTCCCTTTCCCCAACCACAGCGCATGGGAGGAGATCTCTGCATACTACACCTTCACCCAGAGCGAGCAGTGCTACAGCACCCTGCAGCGCTATGTGGAGAGGACAGACAGGGACTTCCCAGAGAACAAATCTGTGTTGGACGTAGAGTATGGTGAAAGAGATGCTCTGAGAAACAACTGACTGTGGTTCTGGGTTGGCTGCTGGTCGACTCTATCATGTTGTCCAGTCTGCTGCTGACCTGTGTGGCTCGGTGCACCTCCCCCATCAGTTACCTGCAGATCCGCTTTTGGAGAGACTATGTTCACGAAGAGAGCAGCCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95261 lncRNA upstream 27237 8068055 ~ 8069124 (+) True G71220
TU95239 lncRNA upstream 35560 8060110 ~ 8060801 (+) True G71201
TU95252 lncRNA upstream 36556 8049035 ~ 8059805 (+) True G71211
TU95237 lncRNA upstream 48775 8046950 ~ 8047586 (+) False G71200
TU95270 lncRNA downstream 5494 8109886 ~ 8111425 (+) True G71226
TU95374 lncRNA downstream 23307 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA downstream 27857 8132249 ~ 8132787 (+) True G71305
TU95391 lncRNA downstream 94561 8198953 ~ 8199908 (+) True G71323
TU95393 lncRNA downstream 112285 8216677 ~ 8236718 (+) True G71325
XM_039804938.1 mRNA upstream 69 8091652 ~ 8096292 (+) True LOC120561722
XM_039804939.1 mRNA upstream 6702 8083900 ~ 8089659 (+) True LOC120561723
XM_039804937.1 mRNA upstream 36945 8048460 ~ 8059416 (+) True tcaim
XM_039806873.1 mRNA upstream 49683 8029682 ~ 8046678 (+) True gpd1l
XM_039807228.1 mRNA upstream 191786 7885697 ~ 7904575 (+) True LOC120563115
XM_039804941.1 mRNA downstream 472 8104864 ~ 8109365 (+) True LOC120561725
XM_039805973.1 mRNA downstream 10129 8114521 ~ 8121326 (+) True rwdd1
XM_039806766.1 mRNA downstream 82895 8187287 ~ 8198861 (+) True zgc:114181
XM_039805237.1 mRNA downstream 178988 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA downstream 178989 8283381 ~ 8308065 (+) False ano10a
TU95170 other upstream 294981 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2135507 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2503312 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2678440 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3430255 4665784 ~ 4666106 (+) True G70654
TU95377 other downstream 17209 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 178989 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 178989 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 644551 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 705959 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile