RNA id: XM_039804941.1


Basic Information

Item Value
RNA id XM_039804941.1
length 2846
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120561725
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8104864 ~ 8109365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatggcactagatgaaaagggtcagattattattctaagtgtctgacactGCAGAGCCGATGATCTGGACCAGAGAGTTGGCTGTAGCACAACCAGCTCTCAACTTCAGCCTGTCTGTATCCAAAGGTAACGTCTGTAAAAGCTGCGCCAAGTGCAGCTCGACATTTAGTTGGCACAATTCGGAAATTTGCAAGTgaaaatctttttaaacaaaacgAAGCTAACCTGTCTGTACTCCAAAACAAAAACTCTCTGGATCTGCTGTCTCCACACTCCTGTTCACGTTCCATGCTATAACCTCCATGGATCCACACCGCTGTCTTCTGGCAAGTCACCTCGCGAGATTTCAGAATGAGACTTTTCCATCTTccgataatgttgtcagacacttagaacaataatctgagcctgtcagcggcaaaaacagaacttttagtggacgctgactgacgctgaacatttgtcctgtagggttagATTGCAGCTCGGTTcacggctgccggttacagcgttctcgctcaacGCTGGACCAATTTCCAACatagtcacttacacacaagtgtgtgggaaaatagggttgaaaataggttgaaaaatactgaaattctCATTTAAATAGAGATACAAAGGATGACACAACTGAAAGCAGAACAGTGTGAAATCACGATTCACGTGAGCCTTGATGCCCCCAAATGACTGGGCTGAAACAGGAAATGGACCACTTCCTGTGCACTGCTGGTAGACTGCATACAAACAGTATACATGTACACATTCAGAACGTGAGCTTCAGTGATGAAATGAATGTATTCATATGTGACGGCCTGTGCAGTCATTGTAAAACTCAAAGTGATGGCTTTAATGATGGCGTGGCTGTAACagcagcataataataataataataataatgatgtgcTTCATATGTTCACTGCTTCCTGTATAATGCACTGTGAGTGATTCAGTCTGAGTACTTCACTCTTGTGGTAATGGAACAGAGAAACCACCAAGAGGATGTGCTCACTTCCTCActctgctgctgatgctgactgcctctctctgtctctgcaacaACTGGCACTGTATGTTCTCTACCGAGACATTTCAACAGAAGGAATGAATGCTGTCCTTCTGTACGATTTTCCCCCTTTGCACGTTTTTTAAATTCCAGAACAAAAATTGCTGATTTCATCCTTGTTGAATGATAATGAGACGTGTTTGTTGTGTCtggtgagcgtgtgtgtgcatgaagaGAAACAAATCCAGTTGTCAAACTTCTCATTGCATATAAATGGATGACTGCTTCATATAAAAGTGATTAGAAACAGATGCATGACGCCGTTTCCGTTtctttggtgtgtgttttttttttccagcatgaAAGGGTTTCATGTTGCATTCCTTGCAAGGACACAGACTCACAGTCATTAAAAAACTAGACCAGCAGGTTTTTTTGTAATTGGACAGGAAGCATGTAAAGAGGGATGTACATGAAAACAGAGAAAGGGAAGTAAAGTGCAGCTGTGCCTATCTCTTTAGTGGCAGCGCAGTGGGGACTTCCCTTTGCAGGAGATCAAGAGGCTGTGGGCGGGCCGGAAGGAGCGCCGGACCGACTGAAGGAGGAGTCTGAAGAGAACCAGTGCCAGCCGAAGGGAGTGGCTCAAACAGGCTTGGcagatttgttttgtcttcAGCTGTGAAAGAACACAGGAGAACAGGGATTGACTGCAAACACTCaacatttttctcttttcacTCTCTGTCTTTCACTTGGGTTCATTTCTCGTGGAGTGTGTCTGAAACCTCCCCGCTGACGCCATGGATAACTTCCAGACTGTCCTGCGTTTCTTCATGAACCAGAAATCCACCATTGGCTACAGCTTCATGGCTCTCATGACTGTAGGTGGGGAGCGAATCTTCTCCGTGGTTTCCTTTCAGTGCCCGTGCAACCACGACCAGAACTTTGCCTACGGGCTGACCTTCCTGCTGGGCCCGGCTGCAGTGCTGCTGGTTTTGGGTCTCTTGTTCACCGGCAGGCTGTGGAGGCTCTACACTGGTTGCTGCCTCAACCCCATGAAGCTGTGCCCCCGTGGGAACTGCTTGGGCCACCTCCGGGTGTTGATGAGCATTTTCTGTGGCGCTTGCGTGGCTCCTGTAATGTGGCTCGCCGTGGCCCTGCTCAATGGGACCTTCTATGAGTGTGCGGTCAGTGGTCTGGATGATAACCTGGTGGTGGACCTGTTCTGTAAAAACAAGACGTTGGCGTGTCGGGAGGAGCTGGCCCGAGTGCCCTGTGATCGCTCCAAACTGTCCAGCGATGAGCGCATGGAGCTGCTGCTCATGTTCAGGGCCCAGTCCCAGATCCTGGGCTGGTGTGTGATCATCACCGCTGTCGTCGGGGGCCTCGTGGGTACCTGCTACAAAAACTGCCGCTCCAAAGTCAGCTTCCTGCAGCTCACCTTCTGGAAACGCTACATGGAACAAGAGAAGGAGCGCTTTGATACTCTCGCTGTGGAATACGCCAGCAAACTGGCCGACAGAAACCTGCAGAGCTTCTTTGAGAACAAGGAGCCTGCTCCGTTCCCTTTCCCCAACCACAGGGCATGGGAGGAGATCTCTGCATACTACACCTTCACCCAGAGCGAGCAGTGCTACAGCACCCTGCAGCGCTATGTGGAGAGGACAGACAGGGACTTCCCAGAGAACAAACCTGTGTTGGACGTAGAGCATGGTGGAAGAGATATGCTCTGAGAAACAACTGACTGTGGTGAGACTGttattaaaggacaaatctggcgcaaaatgaacctaggggttaataacacatgtgtaccgagttcgaccgttctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95261 lncRNA upstream 35740 8068055 ~ 8069124 (+) True G71220
TU95239 lncRNA upstream 44063 8060110 ~ 8060801 (+) True G71201
TU95252 lncRNA upstream 45059 8049035 ~ 8059805 (+) True G71211
TU95237 lncRNA upstream 57278 8046950 ~ 8047586 (+) False G71200
TU95270 lncRNA downstream 521 8109886 ~ 8111425 (+) True G71226
TU95374 lncRNA downstream 18334 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA downstream 22884 8132249 ~ 8132787 (+) True G71305
TU95391 lncRNA downstream 89588 8198953 ~ 8199908 (+) True G71323
TU95393 lncRNA downstream 107312 8216677 ~ 8236718 (+) True G71325
XM_039805231.1 mRNA upstream 15 8104249 ~ 8104849 (+) True LOC120561897
XM_039804940.1 mRNA upstream 472 8096361 ~ 8104392 (+) True LOC120561724
XM_039804938.1 mRNA upstream 8572 8091652 ~ 8096292 (+) True LOC120561722
XM_039804939.1 mRNA upstream 15205 8083900 ~ 8089659 (+) True LOC120561723
XM_039804937.1 mRNA upstream 45448 8048460 ~ 8059416 (+) True tcaim
XM_039805973.1 mRNA downstream 5156 8114521 ~ 8121326 (+) True rwdd1
XM_039806766.1 mRNA downstream 77922 8187287 ~ 8198861 (+) True zgc:114181
XM_039805237.1 mRNA downstream 174015 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA downstream 174016 8283381 ~ 8308065 (+) False ano10a
XM_039806352.1 mRNA downstream 254991 8364356 ~ 8384620 (+) True pomgnt2
TU95170 other upstream 303484 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2144010 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2511815 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2686943 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3438758 4665784 ~ 4666106 (+) True G70654
TU95377 other downstream 12236 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 174016 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 174016 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 639578 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 700986 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile